A selection of publications from researchers with the Center for Coastal Physical Oceanography, Old Dominion University.

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Submissions from 2012

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Impact of Tide-Topography Interactions on Basal Melting of Larsen C Ice Shelf, Antarctica, R. D. Mueller, Laurie Padman, Michael S. Dinniman, S. Y. Erofeeva, Helen A. Fricker, and M. A. King

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Predicting the Influence of Seed and Commercial Oyster Fisheries on Metapopulation Genetic Connectivity Using Model Simulations, Daphne Munroe, Eileen E. Hofmann, Eric N. Powell, and John M. Klinck

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The Role of Larval Dispersal in Metapopulation Gene Flow: Local Population Dynamics Matter, Daphne M. Munroe, John M. Klinck, Eileen E. Hofmann, and Eric N. Powell

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How Do Marine Protected Area Strategies Influence Metapopulation Genetic Connectivity? A Modeling Study with Oysters, Daphne Munroe, Eric N. Powell, John M. Klinck, and Eileen E. Hofmann

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Developing Integrated Models of Southern Ocean Food Webs: Including Ecological Complexity, Accounting for Uncertainty and the Importance of Scale, E. J. Murphy, R. D. Cavanagh, E. E. Hofmann, S. L. Hill, A. J. Constable, D. P. Costa, M. H. Pinkerton, N. M. Johnston, P. N. Trathan, J. M. Klinck, D. A. Wolf-Gladrow, K. L. Daly, O. Maury, and S. C. Doney

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Circulation and Behavior Controls on Dispersal of Eastern Oyster (Crassostrea virginica) Larvae in Delaware Bay, Diego A. Narvaez, John M. Klinck, Eric N. Powell, Eileen E. Hofmann, John Wilkin, and Dale B. Haidvogel

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Modeling the Dispersal of Eastern Oyster (Crassostrea virginica) larvae in Delaware Bay, Diego A. Narvaez, John M. Klinck, Eric N. Powell, Eileen E. Hofmann, John Wilkin, and Dale B. Haidvogel

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Oceanic Controls on the Mass Balance of Wilkins Ice Shelf, Antarctica, Laurie Padman, Daniel P. Costs, M. S. Dinniman, Helen A. Fricker, Michael E. Goebel, Luis A. Huckstadt, Angelika Humbert, Ian Joughin, Jan T. M. Lenaerts, Stefan R. M. Ligtenberg, Ted Scambos, and Michiel R. van den Broeke

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The Rise and Fall of Crassostrea Virginica Oyster Reefs: The Role of Disease and Fishing in Their Demise and a Vignette on Their Management, Eric N. Powell, John M. Klinck, Kathryn Ashton-Alcox, Eileen E. Hofmann, and Jason Morson

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Can Oysters Crassostrea virginica Develop Resistance to Dermo Disease in the Field: The Impediment Posed by Climate Cycles, Eric N. Powell, John M. Klinck, Ximing Guo, Eileen E. Hofmann, Susan E. Ford, and David Bushek

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A Retrospective Analysis of Sustainable Oyster Harvest from the Louisiana State Primary Seed Grounds, 1999-2010: A Shell-Neutral Modeling Approach, Thomas M. Soniat, Mahdi Abdelguerfi, Eric N. Powell, John M. Klinck, Eileen E. Hofmann, Shengru Tu, Nathan Cooper, Janak Dahal, John Finigan, Benjamin S. Eberline, Jerome F. La Peyre, Megan K. La Peyre, Keith B. Ibos, Brian Lezina, and Patrick Banks

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A Shell-Neutral Modeling Approach Yields Sustainable Oyster Harvest Estimates: A Retrospective Analysis of the Louisiana State Primary Seed Grounds, Thomas M. Soniat, John M. Klinck, Eric N. Powell, Nathan Cooper, Mahdi Abdelguerfi, Eileen E. Hofmann, Janak Dahal, Shengru Tu, John Finigan, Benjamin S. Eberline, Jerome F. La Peyre, Megan K. La Peyre, and Fareed Qaddoura

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Understanding the Success and Failure of Oyster Populations: Periodicities of Perkinsus Marinus, and Oyster Recruitment, Mortality, and Size, Thomas M. Soniat, John M. Klinck, Eric N. Powell, and Eileen E. Hofmann

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End-to-End Models: Management Applications, John H. Steele, Eileen E. Hofmann, and Dian J. Gifford

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A Conceptual Model of an Arctic Sea, P. St-Laurent, F. Straneo, and D. G. Barber

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Circulation and Water Properties and Their Relationship to the Oyster Disease MSX in Delaware Bay, Zhiren Wang, Dale B. Haidvogel, David Bushek, Susan E. Ford, Eileen E. Hofmann, Eric N. Powell, and John Wilkin

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Coupled Physical and Biological Modeling of Atlantic Surfclam Larval Transport and Sub-Population Connectivity in the Middle Atlantic Bight and Georges Bank, Xinzhong (Peter) Zhang, Dale B. Haidvogel, John M. Klinck, Roger Mann, and Eric N. Powell

Submissions from 2011

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Marine and Terrestrial Factors Affecting Ad61ie Penguin Pygoscelfs Adelfae Chick Growth and Recruitment Off the Western Antarctic Peninsula, Erik W. Chapman, Eileen E. Hofmann, Donna L. Patterson, and Christine A. Ribic

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Editorial-The 2nd International Workshop on Modeling the Ocean (IWMO-2010), Tal Ezer, Lie-Yauw Oey, Huijie Xue, and Xiao Hua Wang

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Detection of the 2010 Chilean Tsunami Using Satellite Altimetry, B. D. Hamlington, R. R. Leben, O. A. Godin, J. F. Legeais, E. Gica, and V. V. Titov

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Reconstructing Sea Level Using Cyclostationary Empirical Orthogonal Functions, B. D. Hamlington, R. R. Leben, R. S. Nerem, W. Han, and K.-Y. Kim

The Effect of Signal-to-Noise Ratio on the Study of Sea Level Trends, B. D. Hamlington, R. R. Leben, R. S. Nerem, and K.-Y. Kim

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The US Southern Ocean Global Ocean Ecosystems Dynamics Program, Eileen E. Hofmann, John M. Klinck, Dan P. Costa, Kendra L. Daly, and Joseph J. Torres

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Improving Simulations of the Upper Ocean by Inclusion of Surface Waves in the Mellor-Yamada Turbulence Scheme, Chuan Jiang Huang, Fangli Qiao, Zhenya Song, and Tal Ezer

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The Potential for Oysters, Crassostrea Virginica, to Develop Resistance to Dermo Disease in the Field: Evaluation Using a Gene-Based Population Dynamics Model, Eric N. Powell, John M. Klinck, Ximing Guo, and Susan E. Ford

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Application of a Gene-Based Population Dynamics Model to the Optimal Egg Size Problem: Why Do Bivalve Planktotrophic Eggs Vary in Size?, Eric N. Powell, Jason Morson, and John M. Klinck

Submissions from 2010

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The Role of the Alaskan Stream in Modulating the Bering Sea Climate, Tal Ezer and Lie-Yauw Oey

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Mixing by Shear Instability at High Reynolds Number, W. R. Geyer, A. C. Lavery, M. E. Scully, and J. H. Trowbridge

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IOC Contributions to Science Synthesis, E. E. Hofmann and E. Gross

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On the Nature of Winter Cooling and the Recent Temperature Shift on the Northern Gulf of Alaska Shelf, Markus A. Janout, Thomas J. Weingartner, Thomas C. Royer, and Seth L. Danielson

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Exchange Across the Shelf Break at High Southern Latitudes, J. M. Klinck and M. S. Dinniman

Submissions from 2009

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Combining Remote Sensing Data and an Inundation Model to Map Tidal Mudflat Regions and Improve Flood Predictions: A Proof of Concept Demonstration in Cook Inlet, Alaska, Tal Ezer and Hua Liu

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Profiles of Ocean surface Heating (POSH): A New Model of Upper Ocean Diurnal Warming, Chelle L. Gentemann, Peter J. Minnett, and Brian Ward

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Variations in Sea Surface Roughness Induced by the 2004 Sumatra-Andaman Tsunami, O. A. Godin, V. G. Irisov, R. R. Leben, B. D. Hamlington, and G. A. Wick

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Southern Ocean GLOBEC Research and the Future, Eileen Hofmann

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Understanding How Disease and Environment Combine to Structure Resistance in Estuarine Bivalve Populations, Eileen E. Hofmann, David Bushek, Susan E. Ford, Ximing Guo, Dale Haidvogel, Dennis Hedgecock, John M. Klinck, Coren Milbury, Diego Narvaez, Eric Powell, Yongping Wang, Zhiren Wang, and Liusuo Zhang

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Surface Deformation Induced by Present-Day Ice Melting in Svalbard, H. P. Kierulf, H.-P. Plag, and J. Kohler

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Improving Oceanic Overflow Representation in Climate Models: The Gravity Current Entrainment Climate Process Team, Sonya Legg, Bruce Briegleb, Yeon Chang, Eric P. Chassignet, Gokhan Danabasoglu, Tal Ezer, Arnold L. Gordon, Stephen Griffies, Robert Hallberg, Laura Jackson, William Large, Tamay M. Ozgokmen, Hartmut Peters, Jim Price, Ulrike Riemenschneider, Wanli Wu, Xiaobiao Xu, and Jiayan Yang

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ENSO and Variability of the Antarctic Peninsula Pelagic Marine Ecosystem, Valerie J. Loeb, Eileen E. Hofmann, John M. Klinck, Osmund Holm-Hansen, and Warren B. White

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Multiple Stable Reference Points in Oyster Populations: Biological Relationships for the Eastern Oyster (Crassostrea virginica) in Delaware Bay, Eric N. Powell, John M. Klinck, Kathryn A. Ashton-Alcox, and John N. Kraeuter

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Multiple Stable Reference Points in Oyster Populations: Implications for Reference Point-Based Management, Eric N. Powell, John M. Klinck, Kathryn A. Ashton-Alcox, and John N. Kraeuter

Submissions from 2008

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Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, and Richard Williams

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Hydrodynamic Numerical Ocean Models Support Environmental Studies and Conservation Efforts: From an Arctic Estuary to a Caribbean Coral Reef, Tal Ezer

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On the Movement of Beluga Whales in Cook Inlet, Alaska: Simulations of Tidal and Environmental Impacts Using a Hydrodynamic Inundation Model, Tal Ezer, Roderick Hobbs, and Lie-Yauw Oey

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Quantifying Vertical Mixing in Estuaries, W. Rockwell Geyer, Malcolm E. Scully, and David K. Ralston

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Mesoamerican Reef Spawning Aggregations Help Maintain Fish Population: A Review of Connectivity Research and Priorities for Science Management, W. Heyman, W. B. Kjerfve, and T. Ezer

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Eastern US Continental Shelf Carbon Budget Integrating Models, Data Assimilation, and Analysis, E. E. Hofmann, J. N. Druon, K. Fennel, and M. Friedrichs

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Biology of the Southern Ocean, Eileen E. Hofmann

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Estimation of Shelf-Slope Exchanges Induced by Frontal Instability Near Submarine Canyons, A. Jordi, John M. Klinck, G. Basterretxea, and A. Orfila

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Effects of the Fishery on the Northern Quahog (=Hard Clam, Mercenaria Mercenaria L.) Population in Great South Bay, New York: A Modeling Study, John N. Kraeuter, John M. Klinck, Eric N. Powell, and Eileen E. Hofmann

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Transverse Structure of Wind-Driven Flow at the Entrance to an Estuary: Nansemond River, Diego A. Narváez and Arnoldo Valle-Levinson

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A Modelling Study of Developmental Stage and Environmental Variability Effects on Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, and Gustav-Adolf Paffenhöfer

Submissions from 2007

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Influence of Sea Ice Cover and Icebergs on Circulation and Water Mass Formation in a Numerical Circulation Model of the Ross Sea, Antarctica, Michael S. Dinniman, John M. Klinck, and Walker O. Smith

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Assessment of Skill and Portability in Regional Marine Biogeochemical Models: Role of Multiple Planktonic Groups, Marjorie A. M. Friedrichs, Jeffery A. Dusenberry, Laurence A. Anderson, Robert A. Armstrong, Fei Chai, James R. Christian, Scott C. Doney, John Dunne, Masahiko Fujii, and Jerry D. Wiggert

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Simulation of the Recent Multidecadal Increase of Atlantic Hurricane Activity Using an 18-km-Grid Regional Model, Thomas R. Knutson, Joseph J. Sirutis, Stephen T. Garner, Isaac M. Held, and Robert E. Tuleya

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Nearshore Surface Temperatures in Antofagasta Bay (Chile) and Adjacent Upwelling Centers, A. Piñones, J. C. Castilla, R. Guiñez, and J. L. Largier

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Benthic Predators and Northern Quahog (=Hard Clam) (Mercenaria Mercenaria Linnaeus, 1758) Populations, Eileen Polyakov, John N. Kraeuter, Eileen E. Hofmann, and Stuart C. Buckner

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Is Oyster Shell a Sustainable Estuarine Resource?, Eric N. Powell and John M. Klinck

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Simulations of Phytoplankton Species and Carbon Production in the Equatorial Pacific Ocean 1. Model Configuration and Ecosystem Dynamics, Baris Salihoglu and Eileen E. Hofmann

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Simulations of Phytoplankton Species and Carbon Production in the Equatorial Pacific Ocean 2. Effects of Physical and Biogeochemical Processes, Baris Salihoglu and Eileen E. Hofmann

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Baroclinic Effects and Tides on the Cape Hatteras Continental Shelf, Dana K. Savidge, Catherine R. Edwards, and Mark Santana

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Bottom-Up Forcing And The Decline of Steller Sea Lions (Eumetopias jubatus) In Alaska: Assessing The Ocean Climate Hypothesis, Andrew W. Trites, Arthur J. Miller, Michael A. Alexander, Steven J. Bograd, John A. Calder, Antonietta Capotondi, Kenneth O. Coyle, Emanuele Di Lorenzo, Bruce P. Finney, Edward J. Gregr, Chester E. Grosch, and Thomas C. Royer

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The Sensitivity of the Southwest Monsoon Phytoplankton Bloom to Variations in Aeolian Iron Deposition over the Arabian Sea, Jerry D. Wiggert and Raghu G. Murtugudde

Submissions from 2006

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A Comparison of Global Estimates of Marine Primary Production From Ocean Color, Mary-Elena Carr, Marjorie A. M. Friedrichs, Marjorie Schmeltz, Maki Noguchi Aita, David Antoine, Kevin R. Arrigo, Ichio Asanuma, Oliver Aumont, Richard Barber, and Michael Behrenfeld

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Topographic Influence on Overflow Dynamics: Idealized Numerical Simulations and the Faroe Bank Channel Overflow, Tal Ezer

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Transport of Antarctic Krill (Euphausia superba) Across the Scotia Sea. Part II: Krill Growth and Survival, Bettina A. Fach, Eileen E. Hofmann, and Eugene J. Murphy

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Population Dynamics Model of the Hard Clam, Mercenaria Mercenaria: Development of the Age- and Length-Frequency Structure of the Population, Eileen E. Hofmann, John M. Klinck, John N. Kraeuter, and Eric N. Powell

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Pelagic Functional Group Modeling: Progress, Challenges and Prospects, Raleigh R. Hood, Edward A. Laws, Robert A. Armstrong, Nicholas R. Bates, Christopher W. Brown, Craig A. Carlson, Fei Chai, Scott C. Doney, Paul G. Falkowski, Richard A. Feely, and Marjorie A. M. Friedrichs

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Loop Current Warming by Hurricane Wilma, Lie-Yauw Oey, Tal Ezer, Dong-Ping Wang, S. J. Fan, and Xun-Qiang Yin

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A Temporal Approximate Deconvolution Model for Large-Eddy Simulation, C. D. Pruett, B. C. Thomas, C. E. Grosch, and T. B. Gatski

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Ocean Warming and Freshening in the Northern Gulf of Alaska, Thomas C. Royer and Chester E. Grosch

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Inter-Annual Sea Level Variability in the Southern Gulf of Mexico (1966-1976), David Alberto Salas-de-León, Maria Adela Monreal-Gómez, David Salas-Monreal, Mayra Lorena Riveron-Enzastiga, and Norma Leticia Sánchez-Santillan

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A Geophysical Interpretation of the Secular Displacement and Gravity Rates Observed at Ny-Ålesund, Svalbard in the Arctic— Effects of Post-Glacial Rebound and Present-Day Ice Melting, Tadahiro Sato, Jun'ichi Okuno, Jacques Hinderer, Daniel S. MacMillan, Hans-Peter Plag, Olivier Francis, Reinhard Falk, and Yoichi Fukuda

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Understanding the Success and Failure of Oyster Populations: Climatic Cycles and Perkinsus Marinus, Thomas M. Soniat, John M. Klinck, Eric N. Powell, and Eileen E. Hofmann

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Vertical Distribution of Decapod Larvae in the Entrance of an Equatorward Facing Bay of Central Chile: Implications for Transport, Beatriz Yannicelli, Leonardo R. Castro, Arnoldo Valle-Levinson, Larry Atkinson, and Dante Figueroa

Submissions from 2005

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Can Otolith Elemental Signatures Record The Capture Site of Patagonian toothfish (Dissostichus eleginoides), a Fully Marine Fish in the Southern Ocean?, J. R. Ashford, C. M. Jones, E. Hofmann, I. Everson, C. Moreno, G. Duhamel, and R. Williams

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Evaluation and Derivation of Cloud-Cover Algorithms for Calculation of Surface Irradiance in Sub-Antarctic and Antarctic Environments, Hae-Cheol Kim and Eileen E. Hofmann

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An Exercise in Forecasting Loop Current and Eddy Frontal Positions in the Gulf of Mexico, Lie-Yauw Oey, Tal Ezer, George Forristall, C. Cooper, Steven DiMarco, and S. Fan

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Seasonal Variability of Near-Surface Hydrography and Frontal Features in the Northern Gulf of Alaska and Prince William Sound, Stephen R. Okkonen, David L. Cutchin, and Thomas Royer

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Absorption and Backscattering in the Beaufort and Chukchi Seas, Jian Wang, Glenn F. Cota, and David A. Ruble

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The Role of Feeding Behavior in Sustaining Copepod Populations in the Tropical Ocean, J. D. Wiggert, A. G. E. Haskell, G.-A. Paffenhofer, E. E. Hofmann, and J. M. Klinck

Submissions from 2004

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Satellite Evidence of Hurricane-Induced Phytoplankton Blooms in an Oceanic Desert, S. M. Babin, J. A. Carton, T. D. Dickey, and J. D. Wiggert

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Numerical Study of the Diapycnal Flow Through a Tidal Front With Passive Tracers, Chingming Dong, Robert Houghton, Hsien-Wang Ou, Dake Chen, and Tal Ezer

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Simulations of the Influence of the West Caribbean Sea Circulation and Eddies on the Meso-American Barrier Reef System, Tal Ezer, Deeptha V. Thattai, and Björn Kjerve

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Lagrangian Modelling Studies of Antarctic Krill (Euphausia superba) Swarm Formation, Eileen E. Hofmann, A. G. Edward Haskell, John M. Klinck, and Cathy M. Lascara

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Advection, Krill, and Antarctic Marine Ecosystems, Eileen E. Hofmann and Eugene J. Murphy

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A Modelling Study of the Influence of Environment and Food Supply on Survival of Crassostrea gigas Larvae, Eileen E. Hofmann, Eric N. Powell, Eleanor A. Bochenek, and John M. Klinck

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Estimation of Drag Coefficient in James River Estuary Using Tidal Velocity Data from a Vessel-Towed ADCP, Chunyan Li, Arnoldo Valle-Levinson, Larry P. Atkinson, Kuo Chuin Wong, and Kamazima M. M. Lwiza

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Modeled and Observed Empirical Orthogonal Functions of Currents in the Yucatan Channel, Gulf of Mexico, Lie-Yauw Oey, Tal Ezer, and Wilton Sturges

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Influence of Short-Term Variations in Food on Survival of Crassotrea Gigas Larvae: A Modeling Study, Eric N. Powell; Eleanor A, Bochenek; John M. Klinck; and Eileen E. Hofmann

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On the Sensitivity of the West Caribbean Sea Circulation to Tides, Wind, and Mesoscale Ocean Eddies: A Three-Dimensional Ocean Model Study, Deeptha V. Thattai, Tal Ezer, and Bjorn Kjerfve

Submissions from 2003

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On Vertical Advection Truncation Errors in Terrain-Following Numerical Models: Comparison to a Laboratory Model for Upwelling Over Submarine Canyons, S. E. Allen, M. S. Dinniman, J. M. Klinck, and D. D. Gorby

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Observations of Cross Channel Structure of Flow in an Energetic Tidal Channel, Mario Caceres, Arnoldo Valle-Levinson, and Larry P. Atkinson

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Bio-Optical Properties of the Labrador Sea, Glenn F. Cota, W. Glen Harrison, Trevor Platt, Shubha Sathyendranath, and Venetia Stuart

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The Variability of Currents in the Yucatan Channel: Analysis of Results from a Numerical Ocean Model, Tal Ezer, Lie-Yauw Oey, Hyun-Chul Lee, and Wilton Sturges

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A Predator's Perspective on Causal Links Between Climate Change, Physical Forcing and Ecosystem Response, William R. Fraser and Eileen E. Hofmann

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The Temporally Filtered Navier-Stokes Equations: Propertes of the Residual Stress, C. D. Pruett, T. B. Gatski, Chester E. Grosch, and W. D. Thacker

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Strong Mid-Depth Currents and a Deep Cyclonic Gyre in the Gulf of Mexico, Wilton Sturges, Eric Chassignet, and Tal Ezer

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Flow Induced by Upwelling Winds in an Equatorward Facing Bay: Gulf of Arauco, Chile, Arnoldo Valle-Levinson, Larry P. Atkinson, Dante Figueroa, and Leonardo Castro

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Reversing Circulation Patterns in a Tropical Estuary, Arnoldo Valle-Levinson and Kathryn T. Bosley