A selection of publications from faculty in the Computer Science Department at Old Dominion University.

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Submissions from 2024

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A-DisETrac Advanced Analytic Dashboard for Distributed Eye Tracking, Yasasi Abeysinghe, Bhanuka Mahanama, Gavindya Jayawardena, Yasith Jayawardena, Mohan Sunkara, Andrew T. Duchowski, Vikas Ashok, and Sampath Jayarathna

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Forecasting Crude Oil Price Using Multiple Factors, Hind Aldabagh, Xianrong Zheng, Mohammad Najand, and Ravi Mukkamala

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Autonomous Strike UAVs for Counterterrorism Missions: Challenges and Preliminary Solutions, Meshari Aljohani, Ravi Mukkamala, and Stephan Olariu

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Autonomous Strike UAVs in Support of Homeland Security Missions: Challenges and Preliminary Solutions, Meshari Aljohani, Ravi Mukkamala, and Stephan Olariu

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Artificial Intelligence for the Electron Ion Collider (AI4EIC), C. Allaire, R. Ammendola, E.-C. Aschenauer, M. Balandat, M. Battaglieri, J. Bernauer, M. Bondì, N. Branson, T. Britton, A. Butter, I. Chahrour, P. Chatagnon, E. Cisbani, E. W. Cline, S. Dash, C. Dean, W. Deconinck, A. Deshpande, M. Diefenthaler, R. Ent, C. Fanelli, M. Finger, M. Finger Jr., E. Fol, S. Furletov, Y. Gao, J. Giroux, N. C. Gunawardhana Waduge, O. Hassan, P. L. Hegde, R. J. Hernandez-Pinto, A. Hiller Blin, T. Horn, J. Huang, A. Jalotra, D. Jayakodige, B. Joo, M. Junaid, N. Kalantarians, P. Karande, B. Kriesten, R. Kunnawalkam Elayavalli, Y. Li, M. Lin, F. Liu, S. Liuti, G. Matousek, M. McEneaney, D. McSpadden, T. Menzo, T. Miceli, V. Mikuni, R. Montgomery, B. Nachman, R. R. Nair, J. Niestroy, S. A. Ochoa Oregon, J. Oleniacz, J. D. Osborn, C. Paudel, C. Pecar, C. Peng, G. N. Perdue, W. Phelps, M. L. Purschke, H. Rajendran, K. Rajput, Y. Ren, D. F. Renteria-Estrada, D. Richford, B. J. Roy, D. Roy, A. Saini, N. Sato, T. Satogata, G. Sborlini, M. Schram, D. Shih, J. Singh, R. Singh, A. Siodmok, J. Stevens, P. Stone, L. Suarez, K. Suresh, A. -N. Tawfik, F. Torales Acosta, N. Tran, R. Trotta, F. J. Twagirayezu, R. Tyson, S. Volkova, A. Vossen, E. Walter, D. Whiteson, M. Williams, S. Wu, N. Zachariou, and P. Zurita

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MOSAIC: A Prune-and-Assemble Approach for Efficient Model Pruning in Privacy-Preserving Deep Learning, Yifei Cai, Qiao Zhang, Rui Ning, Chunsheng Xin, and Hongyi Wu

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ETDPC: A Multimodality Framework for Classifying Pages in Electronic Theses and Dissertations, Muntabir Hasan Choudhury, Lamia Salsabil, William A. Ingram, Edward A. Fox, and Jian Wu

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Developing a Framework for Personalized Video-Based Quantum Information Science Education, Nikos Chrisochoides, Norou Diawara, and Michail Giannakos

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Gaze Transition Entropy as a Measure of Attention Allocation in a Dynamic Workspace Involving Automation, Zixin Cui, Tetsuya Sato, Austin Jackson, Sampath Jayarathna, Makoto Itoh, and Yusuke Yamani

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Identifying New Cancer Genes Based on the Integration of Annotated Gene Sets Via Hypergraph Neural Networks, Chao Deng, Hong-Dong Li, Li-Shen Zhang, Yiwei Liu, Yaohang Li, and Jianxin Wang

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A Chinese Power Text Classification Algorithm Based on Deep Active Learning, Song Deng, Qianliang Li, Renjie Dai, Siming Wei, Di Wu, Yi He, and Xindong Wu

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Image-to-Mesh Conversion Method For Multi-Tissue Medical Image Computing Simulations, Fotis Drakopoulos, Yixun Liu, Kevin Garner, and Nikos Chrisochoides

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Retrogressive Document Manipulation of US Federal Environmental Websites, Lesley Frew, Michael L. Nelson, and Michele C. Weigle

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Charged Track Reconstruction with Artificial Intelligence for CLAS12, Gagik Gavalian, Polykarpos Thomadakis, Angelos Angelopoulos, and Nikos Chrisochoides

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Bayesian Neural Netwok Variational Autoencoder Inverse Mapper (BNN-VAIM) and its Application in Compton Form Factors Extraction, MD Fayaz Bin Hossen, Tareq Alghamdi, Manal Almaeen, and Yaohang Li

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HiTE: A Fast and Accurate Dynamic Boundary Adjustment Approach for Full-Length Transposable Element Detection and Annotation, Kang Hu, Peng Ning, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, and Jianxin Wang

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Building Datasets to Support Information Extraction and Structure Parsing from Electronic Theses and Dissertations, William A. Ingram, Jian Wu, Sampanna Yashwant Kahu, Javaid Akbar Manzoor, Bipasha Banerjee, Aman Ahuja, Muntabir Hasan Choudhury, Lamia Salsabil, Winston Shields, and Edward A. Fox

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Sub-Band Backdoor Attack in Remote Sensing Imagery, Kazi Aminul Islam, Hongyi Wu, Chunsheng Xin, Rui Ning, Liuwan Zhu, and Jiang Li

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Robots Still Outnumber Humans in Web Archives in 2019, But Less Than In 2015 and 2012, Himarsha R. Jayanetti, Kritika Garg, Sawood Alam, Michael L. Nelson, and Michele C. Weigle

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Enhancing Research Productivity: Seamless Integration of Personal Devices and HPC Resources with the Cybershuttle Notebook Gateway, Yasith Jayawardana, Dimuthu Wannipurage, Eroma Abeysinghe, and Suresh Marru

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GLDL: Graph Label Distribution Learning, Yufei Jin, Richard Gao, Yi He, and Xingquan Zhu

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Identifying Patterns for Neurological Disabilities by Integrating Discrete Wavelet Transform and Visualization, Soo Yeon Ji, Sampath Jayarathna, Anne M. Perrotti, Katrina Kardiasmenos, and Dong Hyun Jeong

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Can Large Language Models Discern Evidence for Scientific Hypotheses? Case Studies in the Social Sciences, Sai Koneru, Jian Wu, and Sarah Rajtmajer

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Improving Query Performance in RaaS: A Framework for Reputation As a Service in Decentralized Marketplaces, Ravi Mukkamala, Stephan Olario, and Meshari Aljohani

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The Combined Focal Loss and Dice Loss Function Improves the Segmentation of Beta-Sheets in Medium-Resolution Cryo-Electron-Microscopy Density Maps, Yongcheng Mu, Thu Nguyen, Bryan Hawickhorst, Willy Wriggers, Jiangwen Sun, and Jing He

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Large-Scale Computational Fluid Dynamics Simulations of Aerospace Configurations on the Frontier Exascale System, Eric J. Nielsen, Aaron Walden, Gabriel Nastac, Li Wang, William Jones, Mark Lohry, William K. Anderson, Boris Diskin, Yi Liu, Christopher L. Rumsey, Prahladh Iyer, Patrick Moran, and Mohammad Zubair

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DILF: Differentiable Rendering-Based Multi-View Image-Language Fusion for Zero-Shot 3D Shape Understanding, Xin Ning, Zaiyang Yu, Lusi Li, Weijun Li, and Prayag Tiwari

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Short: Can Citations Tell Us About a Paper's Reproducibility? A Case Study of Machine Learning Papers, Rochana R. Obadage, Sarah M. Rajtmajer, and Jian Wu

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Towards Trust and Reputation as a Service in Society 5.0, Stephan Olariu, Ravi Mukkamala, and Meshari Aljohani

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Enhanced Skin Cancer Diagnosis Through Grid Search Algorithm-Optimized Deep Learning Models for Skin Lesion Analysis, Rudresh Pillai, Neha Sharma, Sheifali Gupta, Deepali Gupta, Sapna Juneja, Saurav Malik, Hong Qin, Mohammed S. Alqahtani, and Amel Ksibi

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Understaning Low Vision Graphical Perception of Bar Charts, Yash Prakash, Akshay Kolgar Nayak, Sampath Jayarathna, Hae-Na Lee, and Vikas Ashok

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All in One Place: Ensuring Usable Access to Online Shopping Items for Blind Users, Yash Prakash, Akshay Kolgar Nayak, Mohan Sunkara, Sampath Jayarathna, Hae-Na Lee, and Vikas Ashok

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Learning Optimal Inter-Class Margin Adaptively For Few-Shot Class-Incremental Learning Via Neural Collapse-Based Meta-Learning, Hang Ran, Weijun Li, Lusi Li, Songsong Tian, Xin Ning, and Prayag Tiwari

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Archiving Digital Marketing: Examining Preservation of Dynamic Content on the Web Through the Lens of Online Advertisements, Christopher Rauch, Alex H. Poole, Travis Reid, Michele C. Weigle, Michael L. Nelson, Faryaneh Poursardar, and Mat Kelly

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Enhancing Heart Disease Prediction With Reinforcement Learning and Data Augmentation, Gayathri R., Sangeetha S. K. B., Sandeep Kumar Mathivanan, Hariharan Rajadurai, Benjula Anbu Malar MB, Saurav Mallik, and Hong Qin

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Quantification of Landside Congestion in Ports: An Analysis Based on GPS Data, Kumushini Thennakoon, Namal Bandaranayake, Senevi Kiridena, and Asela K. Kulatunga

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Runtime Support for CPU-GPU High-Performance Computing On Distributed Memory Platforms, Polykarpos Thomadakis and Nikos Chrisochoides

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A Survey on Few-Shot Class-Incremental Learning, Songsong Tian, Lusi Li, Weijun Li, Hang Ran, Xin Ning, and Prayag Tiwari

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Speculative Anisotropic Mesh Adaptation on Shared Memory for CFD Applications, Christos Tsolakis and Nikos Chrisochoides

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You Shall Know a Forum by the Words they Keep: Analyzing Language Use in Accessibility Forums for Blind Users, Nithiya Venkatraman, Anand Aiyer, Yash Prakash, and Vikas Ashok

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TripHLApan: Predicting HLA Molecules Binding Peptides Based on Triple Coding Matrix and Transfer Learning, Meng Wang, Chuqi Lei, Jianxin Wang, Yaohang Li, and Min Li

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MKG-FENN: A Multimodal Knowledge Graph Fused End-To-End Neural Network for Accurate Drug-Drug Interaction Prediction, Di Wu, Wu Sun, Yi He, Zhong Chen, and Xin Luo

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ScCAD: Cluster Decomposition-Based Anomaly Detection for Rare Cell Identification in Single-Cell Expression Data, Yunpei Xu, Shaokai Wang, Qilong Feng, Jiazhi Xia, Yaohang Li, Hong-Dong Li, and Jianxin Wang

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OSFS-Vague: Online Streaming Feature Selection Algorithm Based on a Vague Set, Jie Yang, Zhijun Wang, Guoyin Wang, Yanmin Liu, Yi He, and Di Wu

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SEER: Backdoor Detection for Vision-Language Models Through Searching Target Text and Image Trigger Jointly, Liuwan Zhu, Rui Ning, Jiang Li, Chunsheng Xin, and Hongyi Wu

Submissions from 2023

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Evaluating Human Eye Features for Objective Measure of Working Memory Capacity, Yasasi Abeysinghe, Enkelejda Kasneci (Ed.), Frederick Shic (Ed.), and Mohamed Khamis (Ed.)

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DeepPatent2: A Large-Scale Benchmarking Corpus for Technical Drawing Understanding, Kehinde Ajayi, Xin Wei, Martin Gryder, Winston Shields, Jian Wu, Shawn M. Jones, Michal Kucer, and Diane Oyen

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A Hybrid Deep Learning Approach for Crude Oil Price Prediction, Hind Aldabagh, Xianrong Zheng, and Ravi Mukkamala

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Toward a Generative Modeling Analysis of CLAS Exclusive 2𝜋 Photoproduction, T. Alghamdi, Y. Alanazi, M. Battaglieri, Ł. Bibrzycki, A. V. Golda, A. N. Hiller Blin, E. L. Isupov, Y. Li, L. Marsicano, W. Melnitchouk, V. I. Mokeev, G. Montaña, A. Pilloni, N. Sato, A. P. Szczepaniak, and T. Vittorini

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Mitigating Anomalous Electricity Consumption in Smart Cities Using an AI-Based Stacked-Generalization Technique, Arshid Ali, Laiq Khan, Nadeem Javaid, Safdar Hussain Bouk, Abdulaziz Aldegheishem, and Nabil Alrahjeh

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AlphaFold2 Model Refinement Using Structure Decoys, Maytha Alshammari, Jing He, and Willy Wriggers

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Hashes Are Not Suitable to Verify Fixity of the Public Archived Web, Mohamed Aturban, Martin Klein, Herbert Van de Sompel, Sawood Alam, Michael L. Nelson, and Michele C. Weigle

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Comparison of Physics-Based Deformable Registration Methods for Image-Guided Neurosurgery, Nikos Chrisochoides, Yixun Liu, Fotis Drakopoulos, Andriy Kot, Panos Foteinos, Christos Tsolakis, Emmanuel Billias, Olivier Clatz, Nicholas Ayache, Andrey Fedorov, Alex Golby, Peter Black, and Ron Kikinis

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MSVEC: A Multidomain Testing Dataset for Scientific Claim Verification, Michael Evans, Dominik Soós, Ethan Landers, and Jian Wu

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Enabling Efficient Web Data-Record Interaction for People with Visual Impairments via Proxy Interfaces, Javedul Ferdous, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok

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Charged Track Reconstruction with Artificial Intelligence for CLAS12, Gagik Gavalian, Polykarpos Thomadakis, Angelos Angelopoulos, and Nikos Chrisochoides

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A Structure-Aware Generative Adversarial Network for Bilingual Lexicon Induction, Bocheng Han, Qian Tao, Lusi Li, and Zhihao Xiong

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Summarizing Web Archive Corpora Via Social Media Storytelling By Automatically Selecting and Visualizing Exemplars, Shawn M. Jones, Martin Klein, Michele C. Weigle, and Michael L. Nelson

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Detecting Deceptive Dark-Pattern Web Advertisements for Blind Screen-Reader Users, Satwick Ram Kodandaram, Mohan Sunkara, Sampath Jayarathna, and Vikas Ashok

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Dial "N" for NXDomain: The Scale, Origin, and Security Implications of DNS Queries to Non-Existent Domains, Gunnan Liu, Lin Jin, Shuai Hao, Yubao Zhang, Daiping Liu, Angelos Stavrou, and Haining Wang

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Tcf21 Marks Visceral Adipose Mesenchymal Progenitors and Functions as a Rate-Limiting Factor During Visceral Adipose Tissue Development, Qianglin Liu, Chaoyang Li, Buhao Deng, Peidong Gao, Leshan Wang, Yuxia Li, Mohammad Shiri, Fozi Alkaifi, Junxing Zhao, Jacqueline M. Stephens, Constantine A. Simintiras, Joseph Francis, Jiangwen Sun, and Xing Fu

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Progenitor Cell Isolation From Mouse Epididymal Adipose Tissue and Sequencing Library Construction, Qianglin Liu, Chaoyang Li, Yuxia Li, Leshan Wang, Xujia Zhang, Buhao Deng, Peidong Gao, Mohammad Shiri, Fozi Alkaifi, Junxing Zhao, Jacqueline M. Stephens, Constantine A. Simintiras, Joseph Francis, Jiangwen Sun, and Xing Fu

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A Structured Narrative Prompt for Prompting Narratives from Large Language Models: Sentiment Assessment of ChatGPT-Generated Narratives and Real Tweets, Christopher J. Lynch, Erik J. Jensen, Virginia Zamponi, Kevin O'Brien, Erika Frydenlund, and Ross Gore

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An Approach to Developing Benchmark Datasets for Protein Secondary Structure Segmentation from Cryo-EM Density Maps, Thu Nguyen, Yongcheng Mu, Jiangwen Sun, and Jing He

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AutoDesc: Facilitating Convenient Perusal of Web Data Items for Blind Users, Yash Prakash, Mohan Sunkara, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok

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Intergenic Transcription in In Vivo Developed Bovine Oocytes and Pre-Implantation Embryos, Saurav Ranjitkar, Mohammad Shiri, Jiangwen Sun, and Xiuchun Tian

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Unttangling Irregular Actin Cytoskeleton Architectures in Tomograms of the Cell with Struwwel Tracer, Salim Sazzed, Peter Scheible, Jing He, and Willy Wriggers

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Enabling Customization of Discussion Forums for Blind Users, Mohan Sunkara, Yash Prakash, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok

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Kumushini Thennakoon (Computer Science PhD Student), Kumushini Thennakoon

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FAIR Signposting Profile, Herbert Van de Sompel, Martin Klein, Shawn Jones, Michael L. Nelson, Simeon Warner, Anusuriya Devaraju, Robert Huber, Wilko Steinhoff, Vyacheslav Tykhonov, Luc Boruta, Enno Meijers, Stian Soiland-Reyes, and Mark Wilkonson

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DFHiC: A Dilated Full Convolution Model to Enhance the Resolution of Hi-C Data, Bin Wang, Kun Liu, Yaohang Li, and Jianxin Wang

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A Single-Cell Atlas of Bovine Skeletal Muscle Reveals Mechanisms Regulating Intramuscular Adipogenesis and Fibrogenesis, Leshan Wang, Peidong Gao, Chaoyag Li, Qianglin Liu, Zeyang Yao, Yuxia Li, Xujia Zhang, Jiangwen Sun, Constantine Simintiras, Matthew Welborn, Kenneth McMillin, Stephanie Oprescu, Shihuan Kuang, and Xing Fu

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A Single-Cell Atlas of Bovine Skeletal Muscle Reveals Mechanisms Regulating Intramuscular Adipogenesis and Fibrogenesis, Leshan Wang, Peidong Gao, Chaoyang Li, Qianglin Liu, Zeyang Yao, Yuxia Li, Xujia Zhang, Jiangwen Sun, Constantine Simintiras, Matthew Welborn, Kenneth McMillin, Stephanie Oprescu, Shihuan Kuang, and Xing Fu

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ClaimDistiller: Scientific Claim Extraction with Supervised Contrastive Learning, Xin Wei, Md Reshad Ul Hoque, Jian Wu, and Jiang Li

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CellBRF: A Feature Selection Method for Single-Cell Clustering Using Cell Balance and Random Forest, Yunpei Xu, Hong-Dong Li, Cui-Xiang Lin, Ruiqing Zheng, Yaohang Li, Jinhui Xu, and Jianxin Wang

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Identifying the Serious Clinical Outcomes of Adverse Reactions to Drugs by a Multi-Task Deep Learning Framework, Haochen Zhao, Peng Ni, Qichang Zhao, Xiao Liang, Di Ai, Shannon Erhardt, Jun Wang, Yaohang Li, and Jiianxin Wang

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MSDRP: A Deep Learning Model Based on Multisource Data for Predicting Drug Response, Haochen Zhao, Xiaoyu Zhang, Qichang Zhao, Yaohang Li, and Jianxin Wang

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Efficient GPU Implementation of Automatic Differentiation for Computational Fluid Dynamics, Mohammad Zubair, Desh Ranjan, Aaron Walden, Gabriel Nastac, Eric Nielsen, Boris Diskin, Marc Paterno, Samuel Jung, and Joshua Hoke Davis

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Optimization of Ported CFD Kernels on Intel Data Center GPU Max 1550 Using oneAPI ESIMD, Mohammad Zubair, Aaron Walden, Gabriel Nastac, Eric Nielsen, Christoph Bauinger, and Xiao Zhu

Submissions from 2022

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NPGREAT: Assembly of the Human Subtelomere Regions with the Use of Ultralong Nanopore Reads and Linked Reads, Eleni Adam, Desh Ranjan, and Harold Riethman

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Machine Learning-Based Event Generator for Electron-Proton Scattering, Y. Alanazi, P. Ambrozewicz, M. Battaglieri, A.N. Hiller Blin, M. P. Kuchera, Y. Li, T. Liu, R. E. McClellan, W. Melnitchouk, E. Pritchard, M. Robertson, N. Sato, R. Strauss, and L. Velasco

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Refinement of AlphaFold2 Models Against Experimental and Hybrid Cryo-EM Density Maps, Maytha Alshammari, Willy Wriggers, Jiangwen Sun, and Jing He

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Hunter: HE-Friendly Structured Pruning for Efficient Privacy-Preserving Deep Learning, Yifei Cai, Qiao Zhang, Rui Ning, Chunsheng Xin, and Hongyi Wu

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Completing Single-Cell DNA Methylome Profiles via Transfer Learning Together With KL-Divergence, Sanjeeva Dodlapati, Zongliang Jiang, and Jiangwen Sun

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InSupport: Proxy Interface for Enabling Efficient Non-Visual Interaction With Web Data Records, Javedul Ferdous, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok

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Segmenting Technical Drawing Figures in US Patents, Md Reshad Ul Hoque, Xin Wei, Muntabir Hasan Choudhury, Kehinde Ajayi, Martin Gryder, Jian Wu, and Diane Oyen

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ArithFusion: An Arithmetic Deep Model for Temporal Remote Sensing Image Fusion, Md Reshad Ul Hoque, Jian Wu, Chiman Kwan, Krzysztof Koperski, and Jiang Li

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Introducing a Real-Time Advanced Eye Movements Analysis Pipeline, Gavindya Jayawardana

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StreamingHub: Interactive Stream Analysis Workflows, Yasith Jayawardana, Vikas G. Ashok, and Sampath Jayarathna

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Toward a Real-Time Index of Pupillary Activity as an Indicator of Cognitive Load, Gavindya Jayawardena, Yasith Jayawardana, Sampath Jayarathna, Jonas Högström, Thomas Papa, Deepak Akkil, Andrew T. Duchowski, Vsevolod Peysakhovich, Izabela Krejtz, Nina Gehrer, and Krzysztof Krejtz

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Camouflaged Poisoning Attack on Graph Neural Networks, Chao Jiang, Yi He, Richard Chapman, and Hongyi Wu

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The DSA Toolkit Shines Light Into Dark and Stormy Archives, Shawn Morgan Jones, Himarsha R. Jayanetti, Alex Osborne, Paul Koerbin, Klein Martin, Michele C. Weigle, and Michael L. Nelson

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DeepPatent: Large Scale Patent Drawing Recognition and Retrieval, Michal Kucer, Diane Oyen, Juan Castorena, and Jian Wu

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Online Deep Learning from Doubly-Streaming Data, Heng Lian, John S. Atwood, Bo-Jian Hou, Jian Wu, and Yi He

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Ready Raider One: Exploring the Misuse of Cloud Gaming Services, Guannan Liu, Daiping Liu, Shuai Hao, Xing Gao, Kun Sun, and Haining Wang

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Loss of Acta2 in Cardiac Fibroblasts Does Not Prevent the Myofibroblast Differentiation or Affect the Cardiac Repair After Myocardial Infarction, Yuxia Li, Chaoyang Li, Qianglin Liu, Leshan Wang, Adam X. Bao, Jangwook P. Jung, Sanjeev Dodlapati, Jingwen Sun, Peidong Gao, Xujia Zhang, Joseph Francis, Jeffery D. Molkentin, and Xing Fu

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Multi-User Eye-Tracking, Bhanuka Mahanama

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Memento Validator: A Toolset for Memento Compliance Testing, Bhanuka Mahanama, Lyudmila Balakireva, Sampath Jayarathna, Michael Nelson, and Martin Klein

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Eye Movement and Pupil Measures: A Review, Bhanuka Mahanama, Yasith Jayawardana, Sundararaman Rengarajan, Gavindya Jayawardena, Leanne Chukoskie, Joseph Snider, and Sampath Jayarathna

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D-Lib Magazine Pioneered Web-Based Scholarly Communication, Michael L. Nelson and Herbert Van de Sompel