A selection of publications from faculty in the Computer Science Department at Old Dominion University.

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Submissions from 2024

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Autonomous Strike UAVs for Counterterrorism Missions: Challenges and Preliminary Solutions, Meshari Aljohani, Ravi Mukkamala, and Stephan Olariu

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A Chinese Power Text Classification Algorithm Based on Deep Active Learning, Song Deng, Qianliang Li, Renjie Dai, Siming Wei, Di Wu, Yi He, and Xindong Wu

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Identifying Patterns for Neurological Disabilities by Integrating Discrete Wavelet Transform and Visualization, Soo Yeon Ji, Sampath Jayarathna, Anne M. Perrotti, Katrina Kardiasmenos, and Dong Hyun Jeong

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DILF: Differentiable Rendering-Based Multi-View Image-Language Fusion for Zero-Shot 3D Shape Understanding, Xin Ning, Zaiyang Yu, Lusi Li, Weijun Li, and Prayag Tiwari

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A Survey on Few-Shot Class-Incremental Learning, Songsong Tian, Lusi Li, Weijun Li, Hang Ran, Xin Ning, and Prayag Tiwari

Submissions from 2023

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Evaluating Human Eye Features for Objective Measure of Working Memory Capacity, Yasasi Abeysinghe, Enkelejda Kasneci (Ed.), Frederick Shic (Ed.), and Mohamed Khamis (Ed.)

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DeepPatent2: A Large-Scale Benchmarking Corpus for Technical Drawing Understanding, Kehinde Ajayi, Xin Wei, Martin Gryder, Winston Shields, Jian Wu, Shawn M. Jones, Michal Kucer, and Diane Oyen

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A Hybrid Deep Learning Approach for Crude Oil Price Prediction, Hind Aldabagh, Xianrong Zheng, and Ravi Mukkamala

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Toward a Generative Modeling Analysis of CLAS Exclusive 2𝜋 Photoproduction, T. Alghamdi, Y. Alanazi, M. Battaglieri, Ł. Bibrzycki, A. V. Golda, A. N. Hiller Blin, E. L. Isupov, Y. Li, L. Marsicano, W. Melnitchouk, V. I. Mokeev, G. Montaña, A. Pilloni, N. Sato, A. P. Szczepaniak, and T. Vittorini

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Mitigating Anomalous Electricity Consumption in Smart Cities Using an AI-Based Stacked-Generalization Technique, Arshid Ali, Laiq Khan, Nadeem Javaid, Safdar Hussain Bouk, Abdulaziz Aldegheishem, and Nabil Alrahjeh

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AlphaFold2 Model Refinement Using Structure Decoys, Maytha Alshammari, Jing He, and Willy Wriggers

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Hashes Are Not Suitable to Verify Fixity of the Public Archived Web, Mohamed Aturban, Martin Klein, Herbert Van de Sompel, Sawood Alam, Michael L. Nelson, and Michele C. Weigle

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Comparison of Physics-Based Deformable Registration Methods for Image-Guided Neurosurgery, Nikos Chrisochoides, Yixun Liu, Fotis Drakopoulos, Andriy Kot, Panos Foteinos, Christos Tsolakis, Emmanuel Billias, Olivier Clatz, Nicholas Ayache, Andrey Fedorov, Alex Golby, Peter Black, and Ron Kikinis

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MSVEC: A Multidomain Testing Dataset for Scientific Claim Verification, Michael Evans, Dominik Soós, Ethan Landers, and Jian Wu

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Enabling Efficient Web Data-Record Interaction for People with Visual Impairments via Proxy Interfaces, Javedul Ferdous, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok

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Charged Track Reconstruction with Artificial Intelligence for CLAS12, Gagik Gavalian, Polykarpos Thomadakis, Angelos Angelopoulos, and Nikos Chrisochoides

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Summarizing Web Archive Corpora Via Social Media Storytelling By Automatically Selecting and Visualizing Exemplars, Shawn M. Jones, Martin Klein, Michele C. Weigle, and Michael L. Nelson

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Detecting Deceptive Dark-Pattern Web Advertisements for Blind Screen-Reader Users, Satwick Ram Kodandaram, Mohan Sunkara, Sampath Jayarathna, and Vikas Ashok

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Dial "N" for NXDomain: The Scale, Origin, and Security Implications of DNS Queries to Non-Existent Domains, Gunnan Liu, Lin Jin, Shuai Hao, Yubao Zhang, Daiping Liu, Angelos Stavrou, and Haining Wang

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Tcf21 Marks Visceral Adipose Mesenchymal Progenitors and Functions as a Rate-Limiting Factor During Visceral Adipose Tissue Development, Qianglin Liu, Chaoyang Li, Buhao Deng, Peidong Gao, Leshan Wang, Yuxia Li, Mohammad Shiri, Fozi Alkaifi, Junxing Zhao, Jacqueline M. Stephens, Constantine A. Simintiras, Joseph Francis, Jiangwen Sun, and Xing Fu

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Progenitor Cell Isolation From Mouse Epididymal Adipose Tissue and Sequencing Library Construction, Qianglin Liu, Chaoyang Li, Yuxia Li, Leshan Wang, Xujia Zhang, Buhao Deng, Peidong Gao, Mohammad Shiri, Fozi Alkaifi, Junxing Zhao, Jacqueline M. Stephens, Constantine A. Simintiras, Joseph Francis, Jiangwen Sun, and Xing Fu

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A Structured Narrative Prompt for Prompting Narratives from Large Language Models: Sentiment Assessment of ChatGPT-Generated Narratives and Real Tweets, Christopher J. Lynch, Erik J. Jensen, Virginia Zamponi, Kevin O'Brien, Erika Frydenlund, and Ross Gore

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An Approach to Developing Benchmark Datasets for Protein Secondary Structure Segmentation from Cryo-EM Density Maps, Thu Nguyen, Yongcheng Mu, Jiangwen Sun, and Jing He

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AutoDesc: Facilitating Convenient Perusal of Web Data Items for Blind Users, Yash Prakash, Mohan Sunkara, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok

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Intergenic Transcription in In Vivo Developed Bovine Oocytes and Pre-Implantation Embryos, Saurav Ranjitkar, Mohammad Shiri, Jiangwen Sun, and Xiuchun Tian

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Unttangling Irregular Actin Cytoskeleton Architectures in Tomograms of the Cell with Struwwel Tracer, Salim Sazzed, Peter Scheible, Jing He, and Willy Wriggers

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Enabling Customization of Discussion Forums for Blind Users, Mohan Sunkara, Yash Prakash, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok

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Kumushini Thennakoon (Computer Science PhD Student), Kumushini Thennakoon

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FAIR Signposting Profile, Herbert Van de Sompel, Martin Klein, Shawn Jones, Michael L. Nelson, Simeon Warner, Anusuriya Devaraju, Robert Huber, Wilko Steinhoff, Vyacheslav Tykhonov, Luc Boruta, Enno Meijers, Stian Soiland-Reyes, and Mark Wilkonson

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DFHiC: A Dilated Full Convolution Model to Enhance the Resolution of Hi-C Data, Bin Wang, Kun Liu, Yaohang Li, and Jianxin Wang

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A Single-Cell Atlas of Bovine Skeletal Muscle Reveals Mechanisms Regulating Intramuscular Adipogenesis and Fibrogenesis, Leshan Wang, Peidong Gao, Chaoyag Li, Qianglin Liu, Zeyang Yao, Yuxia Li, Xujia Zhang, Jiangwen Sun, Constantine Simintiras, Matthew Welborn, Kenneth McMillin, Stephanie Oprescu, Shihuan Kuang, and Xing Fu

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A Single-Cell Atlas of Bovine Skeletal Muscle Reveals Mechanisms Regulating Intramuscular Adipogenesis and Fibrogenesis, Leshan Wang, Peidong Gao, Chaoyang Li, Qianglin Liu, Zeyang Yao, Yuxia Li, Xujia Zhang, Jiangwen Sun, Constantine Simintiras, Matthew Welborn, Kenneth McMillin, Stephanie Oprescu, Shihuan Kuang, and Xing Fu

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ClaimDistiller: Scientific Claim Extraction with Supervised Contrastive Learning, Xin Wei, Md Reshad Ul Hoque, Jian Wu, and Jiang Li

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CellBRF: A Feature Selection Method for Single-Cell Clustering Using Cell Balance and Random Forest, Yunpei Xu, Hong-Dong Li, Cui-Xiang Lin, Ruiqing Zheng, Yaohang Li, Jinhui Xu, and Jianxin Wang

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Identifying the Serious Clinical Outcomes of Adverse Reactions to Drugs by a Multi-Task Deep Learning Framework, Haochen Zhao, Peng Ni, Qichang Zhao, Xiao Liang, Di Ai, Shannon Erhardt, Jun Wang, Yaohang Li, and Jiianxin Wang

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MSDRP: A Deep Learning Model Based on Multisource Data for Predicting Drug Response, Haochen Zhao, Xiaoyu Zhang, Qichang Zhao, Yaohang Li, and Jianxin Wang

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Efficient GPU Implementation of Automatic Differentiation for Computational Fluid Dynamics, Mohammad Zubair, Desh Ranjan, Aaron Walden, Gabriel Nastac, Eric Nielsen, Boris Diskin, Marc Paterno, Samuel Jung, and Joshua Hoke Davis

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Optimization of Ported CFD Kernels on Intel Data Center GPU Max 1550 Using oneAPI ESIMD, Mohammad Zubair, Aaron Walden, Gabriel Nastac, Eric Nielsen, Christoph Bauinger, and Xiao Zhu

Submissions from 2022

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NPGREAT: Assembly of the Human Subtelomere Regions with the Use of Ultralong Nanopore Reads and Linked Reads, Eleni Adam, Desh Ranjan, and Harold Riethman

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Machine Learning-Based Event Generator for Electron-Proton Scattering, Y. Alanazi, P. Ambrozewicz, M. Battaglieri, A.N. Hiller Blin, M. P. Kuchera, Y. Li, T. Liu, R. E. McClellan, W. Melnitchouk, E. Pritchard, M. Robertson, N. Sato, R. Strauss, and L. Velasco

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Refinement of AlphaFold2 Models Against Experimental and Hybrid Cryo-EM Density Maps, Maytha Alshammari, Willy Wriggers, Jiangwen Sun, and Jing He

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Hunter: HE-Friendly Structured Pruning for Efficient Privacy-Preserving Deep Learning, Yifei Cai, Qiao Zhang, Rui Ning, Chunsheng Xin, and Hongyi Wu

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Completing Single-Cell DNA Methylome Profiles via Transfer Learning Together With KL-Divergence, Sanjeeva Dodlapati, Zongliang Jiang, and Jiangwen Sun

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InSupport: Proxy Interface for Enabling Efficient Non-Visual Interaction With Web Data Records, Javedul Ferdous, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok

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Segmenting Technical Drawing Figures in US Patents, Md Reshad Ul Hoque, Xin Wei, Muntabir Hasan Choudhury, Kehinde Ajayi, Martin Gryder, Jian Wu, and Diane Oyen

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ArithFusion: An Arithmetic Deep Model for Temporal Remote Sensing Image Fusion, Md Reshad Ul Hoque, Jian Wu, Chiman Kwan, Krzysztof Koperski, and Jiang Li

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Introducing a Real-Time Advanced Eye Movements Analysis Pipeline, Gavindya Jayawardana

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StreamingHub: Interactive Stream Analysis Workflows, Yasith Jayawardana, Vikas G. Ashok, and Sampath Jayarathna

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Toward a Real-Time Index of Pupillary Activity as an Indicator of Cognitive Load, Gavindya Jayawardena, Yasith Jayawardana, Sampath Jayarathna, Jonas Högström, Thomas Papa, Deepak Akkil, Andrew T. Duchowski, Vsevolod Peysakhovich, Izabela Krejtz, Nina Gehrer, and Krzysztof Krejtz

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Camouflaged Poisoning Attack on Graph Neural Networks, Chao Jiang, Yi He, Richard Chapman, and Hongyi Wu

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The DSA Toolkit Shines Light Into Dark and Stormy Archives, Shawn Morgan Jones, Himarsha R. Jayanetti, Alex Osborne, Paul Koerbin, Klein Martin, Michele C. Weigle, and Michael L. Nelson

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DeepPatent: Large Scale Patent Drawing Recognition and Retrieval, Michal Kucer, Diane Oyen, Juan Castorena, and Jian Wu

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Online Deep Learning from Doubly-Streaming Data, Heng Lian, John S. Atwood, Bo-Jian Hou, Jian Wu, and Yi He

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Ready Raider One: Exploring the Misuse of Cloud Gaming Services, Guannan Liu, Daiping Liu, Shuai Hao, Xing Gao, Kun Sun, and Haining Wang

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Loss of Acta2 in Cardiac Fibroblasts Does Not Prevent the Myofibroblast Differentiation or Affect the Cardiac Repair After Myocardial Infarction, Yuxia Li, Chaoyang Li, Qianglin Liu, Leshan Wang, Adam X. Bao, Jangwook P. Jung, Sanjeev Dodlapati, Jingwen Sun, Peidong Gao, Xujia Zhang, Joseph Francis, Jeffery D. Molkentin, and Xing Fu

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Multi-User Eye-Tracking, Bhanuka Mahanama

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Memento Validator: A Toolset for Memento Compliance Testing, Bhanuka Mahanama, Lyudmila Balakireva, Sampath Jayarathna, Michael Nelson, and Martin Klein

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Eye Movement and Pupil Measures: A Review, Bhanuka Mahanama, Yasith Jayawardana, Sundararaman Rengarajan, Gavindya Jayawardena, Leanne Chukoskie, Joseph Snider, and Sampath Jayarathna

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D-Lib Magazine Pioneered Web-Based Scholarly Communication, Michael L. Nelson and Herbert Van de Sompel

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Is Ethereum's ProgPoW ASIC Resistant?, Jason Orender, Ravi Mukkamala, Mohammad Zubair, Steven Furnell (Ed.), Paolo Mori (Ed.), Edgar Weippl (Ed.), and Oliver Camp (Ed.)

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A Synthetic Prediction Market for Estimating Confidence in Published Work, Sarah Rajtmajer, Christopher Griffin, Jian Wu, Robert Fraleigh, Laxmann Balaji, Anna Squicciarini, Anthony Kwasnica, David Pennock, Michael McLaughlin, Timothy Fritton, Nishanth Nakshatri, Arjun Menon, Sai Ajay Modukuri, Rajal Nivargi, Xin Wei, and Lee Giles

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m-CUBES: An Efficient and Portable Implementation of Multi-Dimensional Integration for GPUs, Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balŝa Terzić, and Mohammad Zubair

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A Study of Computational Reproducibility Using URLs Linking to Open Access Datasets and Software, Lamia Salsabil, Jian Wu, Muntabir Hasan Choudhury, William A. Ingram, Edward A. Fox, Sarah M. Rajtmajer, C. Lee Giles, Frédérique Laforest (Ed.), Raphaël Troncy (Ed.), Lionel Médini (Ed.), and Ivan Herman (Ed.)

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Spaghetti Tracer: A Framework for Tracing Semiregular Filamentous Densities in 3D Tomograms, Salim Sazzed, Peter Scheible, Jing He, and Willy Wriggers

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Customer Gaze Estimation in Retail Using Deep Learning, Shashimal Senarath, Primesh Pathirana, Dulani Meedeniya, and Sampath Jayarathna

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Theory Entity Extraction for Social and Behavioral Sciences Papers Using Distant Supervision, Xin Wei, Lamia Salsabil, and Jian Wu

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Visual Descriptor Extraction From Patent Figure Captions: A Case Study of Data Efficiency Between BiLSTM and Transformer, Xin Wei, Jian Wu, Kehinde Ajayi, and Diane Oyen

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Trip Report: 2022 CCI Symposium, Jian Wu

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Scholarly Big Data Quality Assessment: A Case Study of Document Linking and Conflation with S2ORC, Jian Wu, Ryan Hiltabrand, Dominik Soós, and C. Lee Giles

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The Landscape of Accessible Chromatin in Quiescent Cardiac Fibroblasts and Cardiac Fibroblasts Activated After Myocardial Infarction, Chaoyang Yi, Jiangwen Sun, Qianglin Liu, Sanjeeva Dodlapati, Hao Ming, Leshan Wang, Yuxia Li, Rui Li, Zongliang Jiang, Joseph Francis, and Xing Fu

Submissions from 2021

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Systematizing Confidence in Open Research and Evidence (SCORE), Nazanin Alipourfard, Beatrix Arendt, Daniel M. Benjamin, Noam Benkler, Michael Bishop, Mark Burstein, Martin Bush, James Caverlee, Yiling Chen, Chae Clark, Anna Dreber Almenberg, Timothy M. Errington, Fiona Fidler, Nicholas Fox, Aaron Frank, Hannah Fraser, Scott Friedman, Ben Gelman, James Gentile, Jian Wu, et al., and SCORE Collaboration

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Combining Cryo-EM Density Map and Residue Contact for Protein Secondary Structure Topologies, Maytha Alshammari and Jing He

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Smart Parking Systems: Reviewing the Literature, Architecture and Ways Forward, Can Biyik, Zaheer Allam, Gabriele Pieri, Davide Moroni, Muftah O' Fraifer, Eoin O' Connell, Stephan Olariu, and Muhammad Khalid

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Automatic Metadata Extraction Incorporating Visual Features from Scanned Electronic Theses and Dissertations, Muntabir Hasan Choudhury, Himarsha R. Jayanetti, Jian Wu, William A. Ingram, and Edward A. Fox

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fMRI Feature Extraction Model for ADHD Classification Using Convolutional Neural Network, Senuri De Silva, Sanuwani Udara Dayarathna, Gangani Ariyarathne, Dulani Meedeniya, and Sampath Jayarathna

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Adaptive Physics-Based Non-Rigid Registration for Immersive Image-Guided Neuronavigation Systems, Fotis Drakopoulos, Christos Tsolakis, Angelos Angelopoulos, Yixun Liu, Chengjun Yao, Kyriaki Rafailia Kavazidi, Nikolaos Foroglou, Andrey Fedorov, Sarah Frisken, Ron Kikinis, Alexandra Golby, and Nikos Chrisochoides

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Recognizing Figure Labels in Patents, Ming Gong, Xin Wei, Diane Oyen, Jian Wu, and Martin Gryder

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A Survey of Enabling Technologies for Smart Communities, Amna Iqbal and Stephan Olariu

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Analysis of Subtelomeric REXTAL Assemblies Using QUAST, Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao, and Harold Riethman

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Automated Filtering of Eye Movements Using Dynamic AOI in Multiple Granularity Levels, Gavindya Jayawardena and Sampath Jayarathna

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Understanding the Impact of Encrypted DNS on Internet Censorship, Lin Jin, Shuai Hao, Haining Wang, and Chase Cotton

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Large Scale Subject Category Classification of Scholarly Papers With Deep Attentive Neural Networks, Bharath Kandimalla, Shaurya Rohatgi, Jian Wu, and C. Lee Giles

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Extraction and Evaluation of Statistical Information from Social and Behavioral Science Papers, Sree Sai Teja Lanka, Sarah Rajtmajer, Jian Wu, and C. Lee Giles

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Understanding and Predicting Retractions of Published Work, Sai Ajay Modukuri, Sarah Rajtmajer, Anna Cinzia Squicciarini, Jian Wu, and C. Lee Giles

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A Tool for Segmentation of Secondary Structures in 3D Cryo-EM Density Map Components Using Deep Convolutional Neural Networks, Yongcheng Mu, Salim Sazzed, Maytha Alshammari, Jiangwen Sun, and Jing He

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Vehicular Crowdsourcing for Congestion Support in Smart Cities, Stephan Olariu

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SEE-TREND: SEcurE Traffic-Related EveNt Detection in Smart Communities, Stephan Olariu and Dimitrie C. Popescu

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Cybersecurity, Technology, and Society: Developing an Interdisciplinary, Open, General Education Cybersecurity Course, Brian K. Payne, Wu He, Cong Wang, D. E. Wittkower, and Hongyi Wu

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DeapSECURE Computational Training for Cybersecurity Students: Improvements, Mid-Stage Evaluation, and Lessons Learned, Wirawan Purwanto, Yuming He, Jewel Ossom, Qiao Zhang, Liuwan Zhu, Karina Arcaute, Masha Sosonkina, and Hongyi Wu

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Ranked List Fusion and Re-Ranking With Pre-Trained Transformers for ARQMath Lab, Shaurya Rohatgi, Jian Wu, and C. Lee Giles

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PAGANI: A Parallel Adaptive GPU Algorithm for Numerical Integration, Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balša Terzić, and Mohammad Zubair

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SSentiaA: A Self-Supervised Sentiment Analyzer for Classification From Unlabeled Data, Salim Sazzed and Sampath Jayarathna

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Extractive Research Slide Generation Using Windowed Labeling Ranking, Athar Sefid, Prasenjit Mitra, Jian Wu, and C. Lee Giles

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Parallel Anisotropic Unstructured Grid Adaptation, Christos Tsolakis, Nikos Chrisochoides, Michael A. Park, Adrien Loseille, and Todd Michal

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De Novo Prediction of Drug–Target Interactions Using Laplacian Regularized Schatten p-Norm Minimization, Gaoyan Wu, Mengyun Yang, Yaohang Li, and Jianxin Wang

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Towards Aiding Research by Improving Access to Electronic Theses and Dissertations from Multiple Domains, Jian Wu, William A. Ingram, and Edward A. Fox

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You See What I Want You To See: Exploring Targeted Black-Box Transferability Attack for Hash-Based Image Retrieval Systems, Yanru Xiao and Cong Wang

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Detecting Incentivized Review Groups With Co-Review Graph, Yubao Zhang, Shuai Hao, and Haining Wang

Submissions from 2020

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SaIL: Saliency-Driven Injection of ARIA Landmarks, Ali Selman Aydin, Shirin Feiz, Vikas Ashok, and IV Ramakrishnan

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Towards Making Videos Accessible for Low Vision Screen Magnifier Users, Ali Selman Aydin, Shirin Feiz, Vikas Ashok, and IV Ramakrishnan