A selection of publications from faculty in the Computer Science Department at Old Dominion University.

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Submissions from 2022

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Is Ethereum's ProgPoW ASIC Resistant?, Jason Orender, Ravi Mukkamala, Mohammad Zubair, Steven Furnell (Ed.), Paolo Mori (Ed.), Edgar Weippl (Ed.), and Oliver Camp (Ed.)

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A Synthetic Prediction Market for Estimating Confidence in Published Work, Sarah Rajtmajer, Christopher Griffin, Jian Wu, Robert Fraleigh, Laxmann Balaji, Anna Squicciarini, Anthony Kwasnica, David Pennock, Michael McLaughlin, Timothy Fritton, Nishanth Nakshatri, Arjun Menon, Sai Ajay Modukuri, Rajal Nivargi, Xin Wei, and Lee Giles

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m-CUBES: An Efficient and Portable Implementation of Multi-Dimensional Integration for GPUs, Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balŝa Terzić, and Mohammad Zubair

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A Study of Computational Reproducibility Using URLs Linking to Open Access Datasets and Software, Lamia Salsabil, Jian Wu, Muntabir Hasan Choudhury, William A. Ingram, Edward A. Fox, Sarah M. Rajtmajer, C. Lee Giles, Frédérique Laforest (Ed.), Raphaël Troncy (Ed.), Lionel Médini (Ed.), and Ivan Herman (Ed.)

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Spaghetti Tracer: A Framework for Tracing Semiregular Filamentous Densities in 3D Tomograms, Salim Sazzed, Peter Scheible, Jing He, and Willy Wriggers

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Customer Gaze Estimation in Retail Using Deep Learning, Shashimal Senarath, Primesh Pathirana, Dulani Meedeniya, and Sampath Jayarathna

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Theory Entity Extraction for Social and Behavioral Sciences Papers Using Distant Supervision, Xin Wei, Lamia Salsabil, and Jian Wu

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Visual Descriptor Extraction From Patent Figure Captions: A Case Study of Data Efficiency Between BiLSTM and Transformer, Xin Wei, Jian Wu, Kehinde Ajayi, and Diane Oyen

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Trip Report: 2022 CCI Symposium, Jian Wu

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Scholarly Big Data Quality Assessment: A Case Study of Document Linking and Conflation with S2ORC, Jian Wu, Ryan Hiltabrand, Dominik Soós, and C. Lee Giles

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The Landscape of Accessible Chromatin in Quiescent Cardiac Fibroblasts and Cardiac Fibroblasts Activated After Myocardial Infarction, Chaoyang Yi, Jiangwen Sun, Qianglin Liu, Sanjeeva Dodlapati, Hao Ming, Leshan Wang, Yuxia Li, Rui Li, Zongliang Jiang, Joseph Francis, and Xing Fu

Submissions from 2021

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Systematizing Confidence in Open Research and Evidence (SCORE), Nazanin Alipourfard, Beatrix Arendt, Daniel M. Benjamin, Noam Benkler, Michael Bishop, Mark Burstein, Martin Bush, James Caverlee, Yiling Chen, Chae Clark, Anna Dreber Almenberg, Timothy M. Errington, Fiona Fidler, Nicholas Fox, Aaron Frank, Hannah Fraser, Scott Friedman, Ben Gelman, James Gentile, Jian Wu, et al., and SCORE Collaboration

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Combining Cryo-EM Density Map and Residue Contact for Protein Secondary Structure Topologies, Maytha Alshammari and Jing He

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Smart Parking Systems: Reviewing the Literature, Architecture and Ways Forward, Can Biyik, Zaheer Allam, Gabriele Pieri, Davide Moroni, Muftah O' Fraifer, Eoin O' Connell, Stephan Olariu, and Muhammad Khalid

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Automatic Metadata Extraction Incorporating Visual Features from Scanned Electronic Theses and Dissertations, Muntabir Hasan Choudhury, Himarsha R. Jayanetti, Jian Wu, William A. Ingram, and Edward A. Fox

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fMRI Feature Extraction Model for ADHD Classification Using Convolutional Neural Network, Senuri De Silva, Sanuwani Udara Dayarathna, Gangani Ariyarathne, Dulani Meedeniya, and Sampath Jayarathna

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Adaptive Physics-Based Non-Rigid Registration for Immersive Image-Guided Neuronavigation Systems, Fotis Drakopoulos, Christos Tsolakis, Angelos Angelopoulos, Yixun Liu, Chengjun Yao, Kyriaki Rafailia Kavazidi, Nikolaos Foroglou, Andrey Fedorov, Sarah Frisken, Ron Kikinis, Alexandra Golby, and Nikos Chrisochoides

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Recognizing Figure Labels in Patents, Ming Gong, Xin Wei, Diane Oyen, Jian Wu, and Martin Gryder

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A Survey of Enabling Technologies for Smart Communities, Amna Iqbal and Stephan Olariu

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Analysis of Subtelomeric REXTAL Assemblies Using QUAST, Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao, and Harold Riethman

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Metadata-Driven Eye Tracking for Real-Time Applications, Yasith Jayawardana, Gavindya Jayawardena, Andrew T. Duchowski, and Sampath Jayarathna

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Automated Filtering of Eye Movements Using Dynamic AOI in Multiple Granularity Levels, Gavindya Jayawardena and Sampath Jayarathna

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Understanding the Impact of Encrypted DNS on Internet Censorship, Lin Jin, Shuai Hao, Haining Wang, and Chase Cotton

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Large Scale Subject Category Classification of Scholarly Papers With Deep Attentive Neural Networks, Bharath Kandimalla, Shaurya Rohatgi, Jian Wu, and C. Lee Giles

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Extraction and Evaluation of Statistical Information from Social and Behavioral Science Papers, Sree Sai Teja Lanka, Sarah Rajtmajer, Jian Wu, and C. Lee Giles

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Understanding and Predicting Retractions of Published Work, Sai Ajay Modukuri, Sarah Rajtmajer, Anna Cinzia Squicciarini, Jian Wu, and C. Lee Giles

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A Tool for Segmentation of Secondary Structures in 3D Cryo-EM Density Map Components Using Deep Convolutional Neural Networks, Yongcheng Mu, Salim Sazzed, Maytha Alshammari, Jiangwen Sun, and Jing He

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Vehicular Crowdsourcing for Congestion Support in Smart Cities, Stephan Olariu

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SEE-TREND: SEcurE Traffic-Related EveNt Detection in Smart Communities, Stephan Olariu and Dimitrie C. Popescu

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Cybersecurity, Technology, and Society: Developing an Interdisciplinary, Open, General Education Cybersecurity Course, Brian K. Payne, Wu He, Cong Wang, D. E. Wittkower, and Hongyi Wu

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DeapSECURE Computational Training for Cybersecurity Students: Improvements, Mid-Stage Evaluation, and Lessons Learned, Wirawan Purwanto, Yuming He, Jewel Ossom, Qiao Zhang, Liuwan Zhu, Karina Arcaute, Masha Sosonkina, and Hongyi Wu

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Ranked List Fusion and Re-Ranking With Pre-Trained Transformers for ARQMath Lab, Shaurya Rohatgi, Jian Wu, and C. Lee Giles

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PAGANI: A Parallel Adaptive GPU Algorithm for Numerical Integration, Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balša Terzić, and Mohammad Zubair

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SSentiaA: A Self-Supervised Sentiment Analyzer for Classification From Unlabeled Data, Salim Sazzed and Sampath Jayarathna

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Extractive Research Slide Generation Using Windowed Labeling Ranking, Athar Sefid, Prasenjit Mitra, Jian Wu, and C. Lee Giles

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Parallel Anisotropic Unstructured Grid Adaptation, Christos Tsolakis, Nikos Chrisochoides, Michael A. Park, Adrien Loseille, and Todd Michal

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De Novo Prediction of Drug–Target Interactions Using Laplacian Regularized Schatten p-Norm Minimization, Gaoyan Wu, Mengyun Yang, Yaohang Li, and Jianxin Wang

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Towards Aiding Research by Improving Access to Electronic Theses and Dissertations from Multiple Domains, Jian Wu, William A. Ingram, and Edward A. Fox

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You See What I Want You To See: Exploring Targeted Black-Box Transferability Attack for Hash-Based Image Retrieval Systems, Yanru Xiao and Cong Wang

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Detecting Incentivized Review Groups With Co-Review Graph, Yubao Zhang, Shuai Hao, and Haining Wang

Submissions from 2020

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SaIL: Saliency-Driven Injection of ARIA Landmarks, Ali Selman Aydin, Shirin Feiz, Vikas Ashok, and IV Ramakrishnan

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Towards Making Videos Accessible for Low Vision Screen Magnifier Users, Ali Selman Aydin, Shirin Feiz, Vikas Ashok, and IV Ramakrishnan

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A Saliency-Driven Video Magnifier For People With Low Vision, Ali Selman Aydin, Shirin Feiz, IV Ramakrishnan, and Vikas Ashok

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Outlier Profiles of Atomic Structures Derived From X-ray Crystallography and From Cryo-electron Microscopy, Lin Chen, Jing He, and Angelo Facchiano

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A Heuristic Baseline Method for Metadata Extraction from Scanned Electronic Theses and Dissertations, Muntabir H. Choudhury, Jian Wu, William A. Ingam, and Edward A. Fox

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DeepFrag-k: A Fragment-Based Deep Learning Approach for Protein Fold Recognition, Wessam Elhefnawy, Min Li, Jianxin Wang, and Yaohang Li

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SmartCiteCon: Implicit Citation Context Extraction from Academic Literature Using Unsupervised Learning, Chenrui Gao, Haoran Cui, Li Zhang, Jiamin Wang, Wei Lu, and Jian Wu

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Opening Books and the National Corpus of Graduate Research, William A. Ingram, Edward A. Fox, and Jian Wu

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Streaming Analytics and Workflow Automation for DFS, Yasith Jayawardana and Sampath Jayarathna

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MementoEmbed and Raintale for Web Archive Storytelling, Shawn M. Jones, Martin Klein, Michele C. Weigle, and Michael L. Nelson

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SHARI- An Integration of Tools to Visualize the Story of the Day, Shawn M. Jones, Alexander C. Nwala, Martin Klein, Michele C. Weigle, and Michael L. Nelson

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Rotate-and-Press: A Non-Visual Alternative to Point-and-Click, Hae-Na Lee, Vikas Ashok, and I. V. Ramakrishnan

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Repurposing Visual Input Modalities for Blind Users: A Case Study of Word Processors, Hae-Na Lee, Vikas Ashok, and I.V. Ramakrishnan

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Granulosa Cell Proliferation is Inhibited by PGE2 in the Primate Ovulatory Follicle, Patric S. Lundberg, Gil J. Moskowitz, Carmel Bellacose, Esra Demirel, Heidi A. Trau, and Diane M. Duffy

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TMVis: Visualizing Webpage Changes Over Time, Abigail Mabe, Dhruv Patel, Maheedhar Gunnam, Surbhi Shankar, Mat Kelly, Sawood Alam, Michael L. Nelson, and Michele C. Weigle

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DeepMag+ : Sniffing Mobile Apps in Magnetic Field Through Deep Learning, Rui Ning, Cong Wang, ChunSheng Xin, Jiang Li, and Hongyi Wu

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Smart Communities: From Sensors to Internet of Things and to a Marketplace of Services, Stephan Olariu, Nirwan Ansari (Editor), Andreas Ahrens (Editor), and Cesar Benavente-Preces (Editor)

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PSU at CLEF-2020 ARQMath Track: Unsupervised Re-Ranking Using Pretraining, Shaurya Rohatgi, Jian Wu, and C. Lee Giles

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A Genome-Wide Association Study of Cocaine Use Disorder Accounting for Phenotypic Heterogeneity and Gene–Environment Interaction, Jiangwen Sun, Henry R. Kranzler, Joel Gelernter, and Jinbo Bi

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Extreme Ultraviolet Quasar Colours from GALEX Observations of the SDSS DR14Q Catalogue, Daniel E. Vanden Berk, Sarah C. Wesolowski, Mary J. Yeckley, Joseph M. Marcinik, Jean M. Quashnock, Lawrence M. Machia, and Jian Wu

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Gabapentin Drug Misuse Signals: A Pharmacovigilance Assessment Using the FDA Adverse Event Reporting System, Rachel Vickers-Smith, Jiangwen Sun, Richard J. Charnigo, Michelle R. Lofwall, Sharon L. Walsh, and Jennifer R. Havens

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Scholarly Very Large Data: Challenges for Digital Libraries (White Paper), Jian Wu and C. Lee Giles

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Acknowledgement Entity Recognition in CORD-19 Papers, Jian Wu, Pei Wang, Xin Wei, Sarah Rajtmajer, C. Lee Giles, and Christopher Griffin

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Evade Deep Image Retrieval by Stashing Private Images in the Hash Space, Yanru Xiao, Cong Wang, and Xing Gao

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GangSweep: Sweep Out Neural Backdoors by GAN, Liuwan Zhu, Rui Ning, Cong Wang, Chunsheng Xin, and Hongyi Wu

Submissions from 2019

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Impact of HTTP Cookie Violations in Web Archives, Sawood Alam, Michele C. Weigle, and Michael L. Nelson

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MementoMap: An Archive Profile Dissemination Framework, Sawood Alam, Michele C. Weigle, and Michael L. Nelson

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EEG-Based Processing and Classification Methodologies for Autism Spectrum Disorder: A Review, Gunavaran Brihadiswaran, Dilantha Haputhanthri, Sahan Gunathilaka, Dulani Meedeniya, and Sampath Jayarathna

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Dormant Pathogenic CD4(+) T Cells Are Prevalent in the Peripheral Repertoire of Healthy Mice, Anna Cebula, Michal Kuczma, Edyta Szurek, Maciej Pietrzak, Natasha Savage, Wessam R. Elhefnawy, Grzegorz Rempala, Piotr Kraj, and Leszek Ignatowicz

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Multi-View Cluster Analysis With Incomplete Data to Understand Treatment Effects, Guoqing Chao, Jiangwen Sun, Jin Lu, An-Li Wang, Daniel D. Langleben, Chiang-Shan Li, and Jinbo Bi

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A Survey of Attention Deficit Hyperactivity Disorder Identification Using Psychophysiological Data, S. De Silva, S. Dayarathna, G. Ariyarathne, D. Meedeniya, and Sampath Jayarathna

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Electroencephalogram (EEG) For Delineating Objective Measure of Autism Spectrum Disorder, Sampath Jayarathna, Yasith Jayawardana, Mark Jaime, and Sashi Thapaliya

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Web Archives at the Nexus of Good Fakes and Flawed Originals, Michael L. Nelson

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Sec-Lib: Protecting Scholarly Digital Libraries From Infected Papers Using Active Machine Learning Framework, Nir Nissim, Aviad Cohen, Jian Wu, Andrea Lanzi, Lior Rokach, Yuval Elovici, and Lee Giles

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Students with Learning Disabilities, Pair Programming And Situational Motivation, Shana L. Pribesh, Wu He, Silvana M. Watson, Debra A. Major, Li Xu, Ling Li, Xin Tian, Anjee Gorkhali, and Yuming He

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IEEE Access Special Section Editorial: Wirelessly Powered Networks, and Technologies, Theofanis P. Raptis, Nuno B. Carvalho, Diego Masotti, Lei Shu, Cong Wang, and Yuanyuan Yang

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Automatic Slide Generation for Scientific Papers, Athar Sefid, Jian Wu, Prasenjit Mitra, and C. Lee Giles

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A Link Relation to Convey a Preferred URI For Referencing, H. Van de Sompel, Michael Nelson, G. Bilder, J. Kunze, and S. Warner

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Dynamics of Trophoblast Differentiation in Peri-Implantation–Stage Human Embryos, Rachel C. West, Hao Ming, Deirdre M. Logsdon, Jiangwen Sun, Sandeep K. Rajput, Rebecca A. Kile, William B. Schoolcraft, R. Michael Roberts, Rebecca L. Krisher, Zongliang Jiang, and Ye Yuan

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Drug Repositioning Based on Bounded Nuclear Norm Regularization, Mengyun Yang, Huimin Lao, Yaohang Li, and Jianxin Wang

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Overlap Matrix Completion for Predicting Drug-Associated Indications, Menhyun Yang, Huimin Luo, Yaohang Li, Fang-Xiang Wu, and Jianxin Wang

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Clinical Big Data and Deep Learning: Applications, Challenges, and Future Outlooks, Ying Yu, Liangliang Liu, Yaohang Li, and Jianxin Wang

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DeepEP: A Deep Learning Framework for Identifying Essential Proteins, Min Zeng, Min Li, Fang-Xiang Wu, Yaohang Li, and Yi Pan

Submissions from 2018

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A Survey of Archival Replay Banners, Sawood Alam, Mat Kelly, Michele C. Weigle, and Michael L. Nelson

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Unobtrusive and Extensible Archival Replay Banners Using Custom Elements, Sawood Alam, Mat Kelly, Michele C. Weigle, and Michael L. Nelson

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ArchiveNow: Simplified, Extensible, Multi-Archive Preservation, Mohamed Aturban, Mat Kelly, Sawood Alam, John A. Berlin, Michael L. Nelson, and Michele C. Weigle

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It is Hard to Compute Fixity on Archived Web Pages, Mohamed Aturban, Michael L. Nelson, and Michele C. Weigle

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Swimming in a Sea of JavaScript or: How I learned to Stop Worrying and Love High-Fidelity Replay, John A. Berlin, Michael L. Nelson, and Michele C. Weigle

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An Investigation of Atomic Structures Derived from X-ray Crystallography and Cryo-Electron Microscopy Using Distal Blocks of Side-Chains, Lin Chen, Jing He, Salim Sazzed, and Rayshawn Walker

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End-Users Get Maneuvered: Empirical Analysis of Redirection Hijacking in Content Delivery Networks, Shuai Hao, Yubao Zhang, Haining Wang, and Angelos Stavrou

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Quantification of Twist from the Central Lines of β-Strands, Tunazzina Islam, Michael Poteat, and Jing He

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205.3 The Many Shapes of Archive-It, Shawn Jones, Michael L. Nelson, Alexander Nwala, and Michele C. Weigle

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Client-Assisted Memento Aggregation Using The Prefer Header, Mat Kelly, Sawood Alam, Michael L. Nelson, and Michele C. Weigle

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Prediction of lncRNA-Disease Associations Based on Inductive Matrix Completion, Chengqian Lu, Mengyun Yang, Feng Luo, Fang-Xiang Wu, Min Li, Yi Pan, Yaohang Li, and Jianxin Wang

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Why We Need Multiple Web Archives: The Case of blog.reidreport.com, Michael L. Nelson

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A Survey of Matrix Completion Methods for Recommendation Systems, Andy Ramlatchan, Mengyun Yang, Quan Liu, Min Li, Jianxin Wang, and Yaohang Li

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Tracing Actin Filament Bundles in Three-Dimensional Electron Tomography Density Maps of Hair Cell Stereocilia, Salim Sazzed, Junha Song, Julio Kovacs, Willi Wriggers, Manfred Auer, and Jing He

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Non-Canonicaly Recruited TCRαβCD8αα IELs Recognize Microbial Antigens, Lukasz Wojciech, Edyta Szurek, Michal Kuczma, Anna Cebula, Wessam R. Elhefnawy, Maciej Pietrzak, Grzegorz Rempala, and Leszek Ignatowicz

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Efficient Randomized Algorithms for the Fixed Precision Low Rank Matrix Approximation, Wenjian Yu, Yu Gu, and Yaohang Li

Submissions from 2017

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Avoiding Zombies in Archival Replay Using ServiceWorker, Sawood Alam, Mat Kelly, Michele C. Weigle, and Michael L. Nelson