Submissions from 2015
Making Sense of Video Analytics: Lessons Learned from Clickstream Interactions, Attitudes, and Learning Outcome in a Video-Assisted Course, Michail N. Giannakos, Konstantinos Chorianopoulos, and Nikos Chrisochoides
Scaffolding to Improve Writing Skills in a Computer Science Literacy Course, Wu He, Harris Wu, Li Xu, and Kurt Maly
Saccharomyces Boulardii and Bismuth Subsalicylate as Low-Cost Interventions to Reduce the Duration and Severity of Cholera, Johnathan Sheele, Jessica Cartowski, Angela Dart, Arjun Poddar, Shikha Gupta, and Ajay Gupta
High-Performance Simulations of Coherent Synchrotron Radiation on Multicore GPU and CPU Platforms, B. Terzić, A. Godunov, K. Arumugam, D. Ranjan, and M. Zubair
Reminiscing About 15 Years of Interoperability Efforts, Herbert Van de Sompel and Michael L. Nelson
Numerical Geometry of Map and Model Assessment, Willy Wriggers and Jing He
Deep Convolutional Neural Networks for Annotating Gene Expression Patterns in the Mouse Brain, Tao Zeng, Rongjian Li, Ravi Mukkamala, Jieping Ye, and Shuiwang Ji
Submissions from 2014
Toward a Real Time Multi-Tissue Adaptive Physics Based Non-Rigid Registration Framework for Brain Tumor Resection, Fotis Drakopoulos, Panagiotis Foteinos, Yixun Liu, and Nikos Chrisochoides
Automated Identification of Cell Type Specific Genes in the Mouse Brain by Image Computing of Expression Patterns, Rongjian Li, Wenlu Zhang, and Shuiwang Ji
A Nonrigid Registration Method for Correcting Brain Deformation Induced by Tumor Resection, Yixun Liu, Chengjun Yao, Fotis Drakopoulos, Jinsong Wu, Liangfu Zhou, and Nikos Chrisochoides
A Scalable Backward Chaining-Based Reasoner for a Semantic Web, Hui Shi, Kurt Maly, and Steven Zeil
Tracing Beta Strands Using StrandTwister from Cryo-EM Density Maps at Medium Resolutions, Dong Si and Jing He
GPU Accelerated Long-Term Simulations of Beam-Beam Effects in Colliders, B. Terzić, V. Morozov, Y. Roblin, F. Lin, H. Zhang, M. Aturban, D. Ranjan, and M. Zubair
Automatic Curvilinear Quality Mesh Generation Driven by Smooth Boundary and Guaranteed Fidelity, Jing Xu and Andrey N. Chernikov
Template-Based C8-Scorpion: A Protein 8 State Secondary Structure Prediction Method Using Structural Information and Context-Based Features, Ashraf Yaseen and Yaohang Li
Submissions from 2013
The 6th Computational Structural Bioinformatics Workshop Introduction, Jing He, Amarda Shehu, Nurit Haspel, and Brian Chen
Convergence Analysis of Markov Chain Monte Carlo Linear Solvers Using Ulam--von Neumann Algorithm, Hao Ji, Michael Mascagni, and Yaohang Li
A Method for Identifying Personalized Representations in Web Archives, Mat Kelly, Justin F. Brunelle, Michele C. Weigle, and Michael L. Nelson
A Technical Framework for Resource Synchronization, Martin Klein, Robert Sanderson, Herbert Van de Sompel, Simeon Warner, Bernhard Haslhofer, Carl Lagoze, and Michael L. Nelson
Conformational Sampling in Template Free Protein Loop Structure Modeling: An Overview, Yaohang Li
Estimating Loop Length from CryoEM Images at Medium Resolutions, Andrew McKnight, Dong Si, Kamal Al Nasr, Andrey Chemikov, Nikos Chrisochoides, and Jing He
Intensity-Based Skeletonization of CryoEM Gray-Scale Images Using a True Segmentation-Free Algorithm, Kamal Al Nasr, Chunmei Liu, Mugizi Rwebangira, Legand Burge, and Jing He
GPU-optimized Code for Long-term Simulations of Beam-beam Effects in Colliders, Y. Roblin, V. Morozov, B. Terzić, M. Aturban, D. Ranjan, and M. Zubair
Image-Level and Group-Level Models for Drosophila Gene Expression Pattern Annotation, Quian Sun, Sherin Muckatira, Lei Yuan, Shuiwang Ji, Stuart Newfeld, Sudhir Kumar, and Jieping Ye
Dinosolve: A Protein Disulfide Bonding Prediction Server Using Context-Based Features to Enhance Prediction Accuracy, Ashraf Yaseen and Yaohang Li
A Mesh Generation and Machine Learning Framework for Drosophila Gene Expression Pattern Image Analysis, Wenlu Zhang, Daming Feng, Rongjian Li, Andrey Chernikov, Nikos Chrisochoides, Christopher Osgood, Charlotte Konikoff, Stuart Newfeld, Sudhir Kumar, and Shuiwang Ji
Submissions from 2012
On a Versatile Stochastic Growth Model, Samiur Arif, Ismail Khalil, and Stephan Olariu
Generalized Insertion Region Guides for Delaunay Mesh Refinement, Andrey Chernikov and Nikos Chrisochoides
WARCreate: Create Wayback-Consumable WARC Files From Any Webpage, Mat Kelly and Michele C. Weigle
MOMCMC: An Efficient Monte Carlo Method for Multi-Objective Sampling Over Real Parameter Space, Yaohang Li
Cooperation as a Service in VANET: Implementation and Simulation Results, Hajar Mousannif, Ismail Khalil, and Stephan Olariu
A Perspective on Resource Synchronization, Herbert Van de Sompel, Robert Sanderson, Martin Klein, Michael L. Nelson, Bernhard Haslhofer, Simeon Warner, and Carl Lagoze
Learning Sparse Representations for Fruit Fly Gene Expression Pattern Image Annotation and Retreival, Lei Yuan, Alexander Woodard, Shuiwang Ji, Yuan Jiang, Zhi-Hua Zhou, Sudhir Kumar, and Jieping Ye
Submissions from 2011
Special Issue on Wireless Sensor and Actuator Networks, Jiming Chen, Karl H. Johanson, Stephan Olariu, Ioannis Ch. Paschalidis, and Ivan Stojmenovic
Multitissue Tetrahedral Image-to-Mesh Conversion with Guaranteed Quality and Fidelity, Andrey N. Chernikov and Nikos P. Chrisochoides
User Experiments of a Social, Faceted Multimedia Classification System, LiuLiu Fu, Kurt Maly, Elizabeth Rasnick, Harris Wu, and Mohammad Zubair
Computational Network Analysis of the Anatomical and Genetic Organizations in the Mouse Brain, Shuiwang Ji
Vehicular Ad Hoc Networks, Syed R. Rizvi, Stephan Olariu, Christina M. Oinotti, Shaharuddin Salleh, Mona E. Rizvi, and Zainab Zaidi
From Isotropic to Anisotropic Side Chain Representations: Comparison of Three Models for Residue Contact Estimation, Weitao Sun and Jing He
Submissions from 2010
Fully Generalized Two-Dimensional Constrained Delaunay Mesh Refinement, Panagiotis A. Foteinos, Andrey N. Chernikov, and Nikos P. Chrisochoides
The 3rd Computational Structural Bioinformatics Workshop, Jing He and Di Wu
Improving Predicted Protein Loop Structure Ranking Using a Pareto-Optimality Consensus Method, Yaohang Li, Ionel Rata, See-Wing Chiu, and Erik Jakobsson
Structure Prediction for the Helical Skeletons Detected from the Low Resolution Protein Density Map, Kamal Al Nasr, Weitao Sun, and Jing He
Submissions from 2009
Multicast Encryption Infrastructure for Security in Sensor Networks, Richard R. Brooks, Brijesh Pillai, Matthew Pirretti, and Michele C. Weigle
Correlation of Music Charts and Search Engine Rankings, Martin Klein, Olena Hunsicker, and Michael Nelson
Everyone is a Curator: Human-Assisted Preservation for ORE Aggregations, Frank McCown, Michael L. Nelson, and Herbert Van de Sompel
Dynamic Adaptation of Joint Transmission Power and Contention Window in VANET, Danda B. Rawat, Gongjun Yan, Dimitrie C. Popescu, Michele C. Weigle, and Stephan Olariu
Evaluating Multicore Algorithms on the Unified Memory Model, John E. Savage and Mohammad Zubair
Adding eScience Assets to the Data Web, Herbert H. Van de Sompel, Carl Lagoze, Michael L. Nelson, Simeon Warner, Robert Sanderson, and Pete Johnston
Submissions from 2008
Efficient Corona Training Protocols for Sensor Networks, Alan A. Bertossi, Stephan Olariu, and Cristina M. Pinotti
Dedication to Pierre Lallemand on the Occasion of His Retirement, Dominque d'Humieres, Manfred Krafczyk, Li-Shi Luo, and Robert Rubinstein
Emergent Behavior in Massively-Deployed Sensor Networks, Ekaterina Shurkova, Ruzana Ishak, Stephan Olariu, and Shaharuddin Salleh
Creating Preservation-Ready Web Resources, Joan A. Smith and Michael L. Nelson
Submissions from 2007
Optimal Layout of Multicast Groups Using Network Embedded Multicast Security in Ad Hoc Sensor Networks, Richard R. Brooks, Brijesh Pillai, Michele C. Weigle, and Matthew Pirretti
All Minimal Prime Extensions of Hereditary Classes of Graphs, Vassilis Giakoumakis and Stephan Olariu
Assessing the Format of the Presentation of Text in Developing a Reading Strategy Assessment Tool (R-SAT), Sara Gilliam, Joseph P. Magliano, Keith K. Millis, Irwin Levinstein, and Chutima Boonthum
Hybrid Training With Binary Search Protocol for Wireless Sensor Networks, Ruzana Ishak, Qingwen Xu, Stephan Olariu, and Shaharuddin Salleh
How Much Preservation Do I Get if I Do Absolutely Nothing? Using the Web Infrastructure for Digital Preservation, Martin Klein, Frank McCown, Joan A. Smith, and Michael Nelson
iSTART 2: Improvements for Efficiency and Effectiveness, Irwin B. Levinstein, Chutima Boonthum, Srinivasa P. Pillarisetti, Courtney Bell, and Danielle S. McNamara
Brass: A Queueing Manager for Warrick, Frank McCown, Amine Benjelloun, and Michael L. Nelson
Factors Affecting Website Reconstruction From the Web Infrastructure, Frank McCown, Norou Diawara, and Michael L. Nelson
CRATE: A Simple Model for Self-Describing Web Resources, Joan A. Smith and Michael L. Nelson
Providing VANET Security Through Active Position Detection, Gongjun Yan, Gyanesh Choudhary, Michele C. Weigle, and Stephan Olariu
Submissions from 2006
SPLAI: Computational Finite Element Model for Sensor Networks, Ruzana Ishak, Shadaruddin Salleh, Stephan Olariu, and Mohd.Ismail Abdul Aziz
FeDCOR: An Institutional CORDRA Registry, Giridhar Manepalli, Henry Jerez, and Michael L. Nelson
Observed Web Robot Behavior on Decaying Web Subsites, Joan A. Smith, Frank McCown, and Michael L. Nelson
Submissions from 2005
Lessons Learned with Arc, an OAI-PMH Service Provider, Xiaoming Liu, Kurt Maly, and Michael L. Nelson
Final Report for the Development of the NASA Technical Report Server (NTRS), Michael L. Nelson
Archive Ingest and Handling Test, Michael L. Nelson, Johan Bollen, Giridhar Manepalli, and Rabia Haq
Introduction: Data Communication and Topology Algorithms for Sensor Networks, Stephan Olariu, David Simplot-Ryl, and Ivan Stojmenovic
Protecting the Communication Structure in Sensor Networks, S. Olariu, Q. Xu, M. Eltoweissy, and A. Wadaa
Submissions from 2004
iSTART: Interactive Strategy Training for Active Reading and Thinking, Danielle S. McNamara, Irwin B. Levinstein, and Chutima Boonthum
Metadata and Buckets in the Smart Object, Dumb Archive (SODA) Model, Michael L. Nelson, Kurt Maly, Delwin R. Croom Jr., and Steven W. Robbins
Resource Harvesting Within the OAI-PMH Framework, Herbert Van de Sompel, Michael L. Nelson, Carl Lagoze, and Simeon Warner
Submissions from 2003
Report on the Third ACM/IEEE Joint Conference on Digital Libraries (JCDL), Michael L. Nelson
Protocols for Disease Classification from Mass Spectrometry Data, Michael Wagner, Dayanand Naik, and Alex Pothen
Submissions from 2002
Fast Inner Product Computation on Short Buses, R. Lin and S. Olariu
A Scalable Architecture for Harvest-Based Digital Libraries, Xiaoming Liu, Tim Brody, Stevan Harnard, Les Carr, Kurt Maly, Mohammad Zubair, and Michael L. Nelson
Federated Searching Interface Techniques for Heterogeneous OAI Repositories, Xiaoming Liu, Kurt Maly, Mohammad Zubair, Qiaoling Hong, Michael L. Nelson, Frances Knudson, and Irma Holtkamp
Object Persistence and Availability in Digital Libraries, Michael L. Nelson and B. Danette Allen
The Single Row Routing Problem Revisited: A Solution Based on Genetic Algorithms, Albert Y. Zomaya, Roger Karpin, and Stephan Olariu
Submissions from 2001
Efficient Algorithms for Graphs with Few P-4’s, Luitpold Babel, Ton Kloks, Jan Kratochvíl, Dieter Kratsch, Kaiko Müller, and Stephan Olariu
Arc - An OAI Service Provider for Digital Library Federation, Xiaoming Liu, Kurt Maly, Mohammad Zubair, and Michael L. Nelson
Buckets: Smart Objects for Digital Libraries, Michael L. Nelson
A Survey of Complex Object Technologies for Digital Libraries, Michael L. Nelson, Brad Argue, Miles Efron, Shelia Denn, and Maria Cristina Pattuelli
Smart Objects and Open Archives, Michael L. Nelson and Kurt Maly
Submissions from 2000
Upper Bounds to the Clique Width of Graphs, Bruno Courcelle and Stephan Olariu
The UPS Prototype: An Experimental End-User Service Across E-Print Archives, Herbert Van de Sompel, Thomas Krichel, Michael L. Nelson, Patrick Hochstenbach, Victor Lyapunov, Kurt Maly, Mohammad Zubair, Mohamed Kholief, Xiaoming Liu, and Heath O'Connell
Submissions from 1999
On the p-Connectedness of Graphs – a Survey, Luitpold Babel and Stephan Olariu
Compute as Fast as the Engineers Can Think! Utrafast Computing Team Final Report, Robert T. Biedron, P. Mehrotra, Michael L. Nelson, M. L. Preston, J. J. Rehder, J. L. Rogersm, D. H. Rudy, J. Sobieski, and O. O. Storaasli
Reconfigurable Shift Switching Parallel Comparators, R. Lin and S. Olariu
Smart Objects, Dumb Archives: A User-Centric, Layered Digital Library Framework, Kurt Maly, Michael L. Nelson, and Mohammad Zubair
A Digital Library for the National Advisory Committee for Aeronautics, Michael L. Nelson
High-Performance Bus-Based Architectures - Guest Editorial, Stephan Olariu and Rong Lin
Submissions from 1998
On the Structure of Graphs With Few P4s, Luitpold Babel and Stephan Olariu
A Fast Parallel Algorithm to Recognize P4-Sparse Graphs, Rong Lin and Stephan Olariu
Buckets: Aggregative, Intelligent Agents for Publishing, Michael L. Nelson, Kurt Maly, Stewart N. T. Shen, and Mohammad Zubair
Creating a Canonical Scientific and Technical Information Classification System for NCSTRL+, Melissa E. Tiffany and Michael L. Nelson
Submissions from 1997
Time-Optimal Tree Computations on Sparse Meshes, D. Bhagavathi, V. Bokka, H. Gurla, S. Olariu, and J. L. Schwing