A selection of publications from faculty in the Computer Science Department at Old Dominion University.

Follow


Submissions from 2020

PDF

A Saliency-Driven Video Magnifier For People With Low Vision, Ali Selman Aydin, Shirin Feiz, IV Ramakrishnan, and Vikas Ashok

PDF

Outlier Profiles of Atomic Structures Derived From X-ray Crystallography and From Cryo-electron Microscopy, Lin Chen, Jing He, and Angelo Facchiano

PDF

A Heuristic Baseline Method for Metadata Extraction from Scanned Electronic Theses and Dissertations, Muntabir H. Choudhury, Jian Wu, William A. Ingam, and Edward A. Fox

PDF

DeepFrag-k: A Fragment-Based Deep Learning Approach for Protein Fold Recognition, Wessam Elhefnawy, Min Li, Jianxin Wang, and Yaohang Li

PDF

SmartCiteCon: Implicit Citation Context Extraction from Academic Literature Using Unsupervised Learning, Chenrui Gao, Haoran Cui, Li Zhang, Jiamin Wang, Wei Lu, and Jian Wu

PDF

Opening Books and the National Corpus of Graduate Research, William A. Ingram, Edward A. Fox, and Jian Wu

PDF

Streaming Analytics and Workflow Automation for DFS, Yasith Jayawardana and Sampath Jayarathna

PDF

MementoEmbed and Raintale for Web Archive Storytelling, Shawn M. Jones, Martin Klein, Michele C. Weigle, and Michael L. Nelson

PDF

SHARI- An Integration of Tools to Visualize the Story of the Day, Shawn M. Jones, Alexander C. Nwala, Martin Klein, Michele C. Weigle, and Michael L. Nelson

PDF

Rotate-and-Press: A Non-Visual Alternative to Point-and-Click, Hae-Na Lee, Vikas Ashok, and I. V. Ramakrishnan

PDF

Repurposing Visual Input Modalities for Blind Users: A Case Study of Word Processors, Hae-Na Lee, Vikas Ashok, and I.V. Ramakrishnan

PDF

Granulosa Cell Proliferation is Inhibited by PGE2 in the Primate Ovulatory Follicle, Patric S. Lundberg, Gil J. Moskowitz, Carmel Bellacose, Esra Demirel, Heidi A. Trau, and Diane M. Duffy

PDF

TMVis: Visualizing Webpage Changes Over Time, Abigail Mabe, Dhruv Patel, Maheedhar Gunnam, Surbhi Shankar, Mat Kelly, Sawood Alam, Michael L. Nelson, and Michele C. Weigle

PDF

DeepMag+ : Sniffing Mobile Apps in Magnetic Field Through Deep Learning, Rui Ning, Cong Wang, ChunSheng Xin, Jiang Li, and Hongyi Wu

PDF

Smart Communities: From Sensors to Internet of Things and to a Marketplace of Services, Stephan Olariu, Nirwan Ansari (Editor), Andreas Ahrens (Editor), and Cesar Benavente-Preces (Editor)

PDF

PSU at CLEF-2020 ARQMath Track: Unsupervised Re-Ranking Using Pretraining, Shaurya Rohatgi, Jian Wu, and C. Lee Giles

PDF

A Genome-Wide Association Study of Cocaine Use Disorder Accounting for Phenotypic Heterogeneity and Gene–Environment Interaction, Jiangwen Sun, Henry R. Kranzler, Joel Gelernter, and Jinbo Bi

PDF

Extreme Ultraviolet Quasar Colours from GALEX Observations of the SDSS DR14Q Catalogue, Daniel E. Vanden Berk, Sarah C. Wesolowski, Mary J. Yeckley, Joseph M. Marcinik, Jean M. Quashnock, Lawrence M. Machia, and Jian Wu

PDF

Gabapentin Drug Misuse Signals: A Pharmacovigilance Assessment Using the FDA Adverse Event Reporting System, Rachel Vickers-Smith, Jiangwen Sun, Richard J. Charnigo, Michelle R. Lofwall, Sharon L. Walsh, and Jennifer R. Havens

Link

Scholarly Very Large Data: Challenges for Digital Libraries (White Paper), Jian Wu and C. Lee Giles

PDF

Acknowledgement Entity Recognition in CORD-19 Papers, Jian Wu, Pei Wang, Xin Wei, Sarah Rajtmajer, C. Lee Giles, and Christopher Griffin

Link

Evade Deep Image Retrieval by Stashing Private Images in the Hash Space, Yanru Xiao, Cong Wang, and Xing Gao

Link

GangSweep: Sweep Out Neural Backdoors by GAN, Liuwan Zhu, Rui Ning, Cong Wang, Chunsheng Xin, and Hongyi Wu

Submissions from 2019

PDF

Impact of HTTP Cookie Violations in Web Archives, Sawood Alam, Michele C. Weigle, and Michael L. Nelson

PDF

MementoMap: An Archive Profile Dissemination Framework, Sawood Alam, Michele C. Weigle, and Michael L. Nelson

PDF

EEG-Based Processing and Classification Methodologies for Autism Spectrum Disorder: A Review, Gunavaran Brihadiswaran, Dilantha Haputhanthri, Sahan Gunathilaka, Dulani Meedeniya, and Sampath Jayarathna

PDF

Dormant Pathogenic CD4(+) T Cells Are Prevalent in the Peripheral Repertoire of Healthy Mice, Anna Cebula, Michal Kuczma, Edyta Szurek, Maciej Pietrzak, Natasha Savage, Wessam R. Elhefnawy, Grzegorz Rempala, Piotr Kraj, and Leszek Ignatowicz

PDF

Multi-View Cluster Analysis With Incomplete Data to Understand Treatment Effects, Guoqing Chao, Jiangwen Sun, Jin Lu, An-Li Wang, Daniel D. Langleben, Chiang-Shan Li, and Jinbo Bi

PDF

A Survey of Attention Deficit Hyperactivity Disorder Identification Using Psychophysiological Data, S. De Silva, S. Dayarathna, G. Ariyarathne, D. Meedeniya, and Sampath Jayarathna

PDF

Electroencephalogram (EEG) For Delineating Objective Measure of Autism Spectrum Disorder, Sampath Jayarathna, Yasith Jayawardana, Mark Jaime, and Sashi Thapaliya

PDF

Web Archives at the Nexus of Good Fakes and Flawed Originals, Michael L. Nelson

PDF

Sec-Lib: Protecting Scholarly Digital Libraries From Infected Papers Using Active Machine Learning Framework, Nir Nissim, Aviad Cohen, Jian Wu, Andrea Lanzi, Lior Rokach, Yuval Elovici, and Lee Giles

PDF

Students with Learning Disabilities, Pair Programming And Situational Motivation, Shana L. Pribesh, Wu He, Silvana M. Watson, Debra A. Major, Li Xu, Ling Li, Xin Tian, Anjee Gorkhali, and Yuming He

PDF

IEEE Access Special Section Editorial: Wirelessly Powered Networks, and Technologies, Theofanis P. Raptis, Nuno B. Carvalho, Diego Masotti, Lei Shu, Cong Wang, and Yuanyuan Yang

PDF

Automatic Slide Generation for Scientific Papers, Athar Sefid, Jian Wu, Prasenjit Mitra, and C. Lee Giles

Link

A Link Relation to Convey a Preferred URI For Referencing, H. Van de Sompel, Michael Nelson, G. Bilder, J. Kunze, and S. Warner

PDF

Dynamics of Trophoblast Differentiation in Peri-Implantation–Stage Human Embryos, Rachel C. West, Hao Ming, Deirdre M. Logsdon, Jiangwen Sun, Sandeep K. Rajput, Rebecca A. Kile, William B. Schoolcraft, R. Michael Roberts, Rebecca L. Krisher, Zongliang Jiang, and Ye Yuan

PDF

Drug Repositioning Based on Bounded Nuclear Norm Regularization, Mengyun Yang, Huimin Lao, Yaohang Li, and Jianxin Wang

PDF

Overlap Matrix Completion for Predicting Drug-Associated Indications, Menhyun Yang, Huimin Luo, Yaohang Li, Fang-Xiang Wu, and Jianxin Wang

PDF

Clinical Big Data and Deep Learning: Applications, Challenges, and Future Outlooks, Ying Yu, Liangliang Liu, Yaohang Li, and Jianxin Wang

PDF

DeepEP: A Deep Learning Framework for Identifying Essential Proteins, Min Zeng, Min Li, Fang-Xiang Wu, Yaohang Li, and Yi Pan

Submissions from 2018

PDF

A Survey of Archival Replay Banners, Sawood Alam, Mat Kelly, Michele C. Weigle, and Michael L. Nelson

PDF

Unobtrusive and Extensible Archival Replay Banners Using Custom Elements, Sawood Alam, Mat Kelly, Michele C. Weigle, and Michael L. Nelson

Link

ArchiveNow: Simplified, Extensible, Multi-Archive Preservation, Mohamed Aturban, Mat Kelly, Sawood Alam, John A. Berlin, Michael L. Nelson, and Michele C. Weigle

PDF

It is Hard to Compute Fixity on Archived Web Pages, Mohamed Aturban, Michael L. Nelson, and Michele C. Weigle

PDF

Swimming in a Sea of JavaScript or: How I learned to Stop Worrying and Love High-Fidelity Replay, John A. Berlin, Michael L. Nelson, and Michele C. Weigle

PDF

An Investigation of Atomic Structures Derived from X-ray Crystallography and Cryo-Electron Microscopy Using Distal Blocks of Side-Chains, Lin Chen, Jing He, Salim Sazzed, and Rayshawn Walker

Link

End-Users Get Maneuvered: Empirical Analysis of Redirection Hijacking in Content Delivery Networks, Shuai Hao, Yubao Zhang, Haining Wang, and Angelos Stavrou

PDF

Quantification of Twist from the Central Lines of β-Strands, Tunazzina Islam, Michael Poteat, and Jing He

PDF

205.3 The Many Shapes of Archive-It, Shawn Jones, Michael L. Nelson, Alexander Nwala, and Michele C. Weigle

PDF

Client-Assisted Memento Aggregation Using The Prefer Header, Mat Kelly, Sawood Alam, Michael L. Nelson, and Michele C. Weigle

PDF

Prediction of lncRNA-Disease Associations Based on Inductive Matrix Completion, Chengqian Lu, Mengyun Yang, Feng Luo, Fang-Xiang Wu, Min Li, Yi Pan, Yaohang Li, and Jianxin Wang

Link

Why We Need Multiple Web Archives: The Case of blog.reidreport.com, Michael L. Nelson

PDF

A Survey of Matrix Completion Methods for Recommendation Systems, Andy Ramlatchan, Mengyun Yang, Quan Liu, Min Li, Jianxin Wang, and Yaohang Li

PDF

Tracing Actin Filament Bundles in Three-Dimensional Electron Tomography Density Maps of Hair Cell Stereocilia, Salim Sazzed, Junha Song, Julio Kovacs, Willi Wriggers, Manfred Auer, and Jing He

PDF

Non-Canonicaly Recruited TCRαβCD8αα IELs Recognize Microbial Antigens, Lukasz Wojciech, Edyta Szurek, Michal Kuczma, Anna Cebula, Wessam R. Elhefnawy, Maciej Pietrzak, Grzegorz Rempala, and Leszek Ignatowicz

PDF

Efficient Randomized Algorithms for the Fixed Precision Low Rank Matrix Approximation, Wenjian Yu, Yu Gu, and Yaohang Li

Submissions from 2017

PDF

Avoiding Zombies in Archival Replay Using ServiceWorker, Sawood Alam, Mat Kelly, Michele C. Weigle, and Michael L. Nelson

PDF

An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images, Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Stephanie Zeil, Kamal Al Nasr, and Jing He

PDF

Efficient Core Utilization in a Hybrid Parallel Delaunay Meshing Algorithm on Distributed-Memory Cluster, Daming Feng, Andrey N. Chernikov, and Nikos P. Chrisochoides

PDF

Impact of URI Canonicalization on Memento Count, Mat Kelly, Lulwah M. Alkwai, Michael L. Nelson, Michele C. Weigle, and Herbert Van De Sompel

PDF

An Iterative Bézier Method for Fitting Beta-Sheet Component of a Cryo-EM Density Map, Michael Poteat and Jing He

PDF

ANSI/NISO Z39.99-2017 ResourceSync Framework Specification, Kevin Ruthen, Jill Emery, Mark Doyle, Mark Needleman, Sue Baughman, Evan Owens, Oliver Pesch, Mike Dicus, Nassib Nassar, Tim Auger, Amy Kirchhoff, Sally McCallum, Diana Magnoni, Paul Swanson, Gregory Grazevich, Nara Newcomer, Gregory Grazevich, Juha Hakala, Barbara Rapp, Beverly Geckle, Carol Brent, Gary Van Overborg, Rick Burke, Kristin Antelman, Scott Bernier, Pascal Calarco, John Dove, Lucy Harrison, Peter Murray, Christine Stohn, Julie Zhu, Todd Carpenter, Bernhard Haslhofer, Richard Jones, Martin Klein, Graham Klyne, Carl Lagoze, Stuart Lewis, Peter Murray, Michael Nelson, Shlomo Sanders, Robert Sanderson, Herbert Van de Sompel, Paul Walk, Simeon Warner, Zhiwu Xie, and Jeff Young

PDF

Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps, Dong Si and Jing He

PDF

Homeomorphic Tetrahedralization of Multi-material Images with Quality and Fidelity Guarantees, Jing Xu and Andrey N. Chernikov

PDF

Homeomorphic Tetrahedral Tessellation for Biomedical Images, Jing Xu and Andrey N. Chernikov

PDF

Comparing an Atomic Model or Structure to a Corresponding Cryo-Electron Microscopy Image at the Central Axis of a Helix, Stephanie Zeil, Julio Kovacs, Willy Wriggers, and Jing He

Submissions from 2016

PDF

Leveraging Heritrix and the Wayback Machine on a Corporate Intranet: A Case Study on Improving Corporate Archives, Justin F. Brunelle, Krista Ferrante, Eliot Wilczek, Michele C. Weigle, and Michael L. Nelson

PDF

Deep Models for Brain EM Image Segmentation: Novel Insights and improved Performance, Ahmed Fakhry, Hanchuan Peng, and Shuiwang Ji

PDF

A Hybrid Parallel Delaunay Image-to-Mesh Conversion Algorithm Scalable on Distributed-memory Clusters, Daming Feng, Andrey N. Chernikov, and Nikos Chrisochoides

Link

Mementos in the Raw, Shawn M. Jones, Herbert Van de Sompel, and Michael L. Nelson

PDF

Big Data-Enabled Multiscale Serviceability Analysis for Aging Bridges, Yu Liang, Dalei Wu, Guirong Liu, Yaohang Li, Cuilan Gao, Zhongguo John Ma, and Weidong Wu

PDF

A Hybrid Algorithm Based on Optimal Quadratic Spline Collocation and Parareal Deferred Correction for Parabolic PDEs, Jun Liu, Yan Wang, and Rongjian Li

PDF

RCD+: Fast Loop Modeling Server, José R. López-Blanco, Alejandro J. Canosa-Valis, Yaohang Li, and Pablo Chacón

Link

Mementos in the Raw, Take Two, Herbert Van de Sompel, Michael L. Nelson, Lyudmila Balakireva, Martin Klein, Shawn M. Jones, and Harihar Shankar

PDF

FLEXc: Protein Flexibility Prediction Using Context-Based Statistics, Predicted Structural Features, and Sequence Information, Ashraf Yaseen, Mais Nijim, Brandon Williams, Lei Qian, Min Li, Jianxin Wang, and Yaohang Li

PDF

Interactively Cutting and Constraining Vertices in Meshes Using Augmented Matrices, Yu-Hong Yeung, Jessica Crouch, and Alex Pothen

Submissions from 2015

PDF

Characteristics of Social Media Stories, Yasmin AINoamany, Michele C. Weigle, and Michael L. Nelson

PDF

Profiling Web Archives for Efficient Memento Query Routing, Sawood Alam, Michael L. Nelson, Herbert Van de Sompel, Lyudmila L. Balakireva, Harihar Shankar, and David S. H. Rosenthal

PDF

ISQuest: Finding Insertion Sequences in Prokaryotic Sequence Fragment Data, Abhishek Biswas, David T. Gauthier, Desh Ranjan, and Mohammad Zubair

PDF

A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data, Abhishek Biswas, Desh Ranjan, Mohammad Zubair, and Jing He

PDF

Extreme-Scale Parallel Mesh Generation: Telescopic Approach, Nikos Chrisochoides, Andrey Chernikov, Daming Feng, and Christos Tsolakis

PDF

Tetrahedral Image-to-Mesh Conversion Software for Anatomic Modeling of Arteriovenous Malformations, Fotis Drakopoulos, Ricardo Ortiz, Andinet Enquobahrie, Deanna Sasaki-Adams, and Nikos Chrisochoides

PDF

Global Analysis of Gene Expression and Projection Target Correlations in the Mouse Brain, Ahmed Fakhry, Tao Zeng, Hanchuan Peng, and Shuiwang Ji

PDF

Scalable 3D Hybrid Parallel Delaunay Image-to-Mesh Conversion Algorithm for Distributed Shared Memory Architectures, Daming Feng, Christos Tsolakis, Andrey N. Chernikov, and Nikos P. Chrisochoides

PDF

Making Sense of Video Analytics: Lessons Learned from Clickstream Interactions, Attitudes, and Learning Outcome in a Video-Assisted Course, Michail N. Giannakos, Konstantinos Chorianopoulos, and Nikos Chrisochoides

PDF

Scaffolding to Improve Writing Skills in a Computer Science Literacy Course, Wu He, Harris Wu, Li Xu, and Kurt Maly

PDF

Saccharomyces Boulardii and Bismuth Subsalicylate as Low-Cost Interventions to Reduce the Duration and Severity of Cholera, Johnathan Sheele, Jessica Cartowski, Angela Dart, Arjun Poddar, Shikha Gupta, and Ajay Gupta

PDF

High-Performance Simulations of Coherent Synchrotron Radiation on Multicore GPU and CPU Platforms, B. Terzić, A. Godunov, K. Arumugam, D. Ranjan, and M. Zubair

PDF

Reminiscing About 15 Years of Interoperability Efforts, Herbert Van de Sompel and Michael L. Nelson

PDF

Numerical Geometry of Map and Model Assessment, Willy Wriggers and Jing He

PDF

Deep Convolutional Neural Networks for Annotating Gene Expression Patterns in the Mouse Brain, Tao Zeng, Rongjian Li, Ravi Mukkamala, Jieping Ye, and Shuiwang Ji

Submissions from 2014

PDF

Toward a Real Time Multi-Tissue Adaptive Physics Based Non-Rigid Registration Framework for Brain Tumor Resection, Fotis Drakopoulos, Panagiotis Foteinos, Yixun Liu, and Nikos Chrisochoides

PDF

Moved But Not Gone: An Evaluation of Real-Time Methods for Discovering Replacement Web Pages, Martin Klein and Michael L. Nelson

PDF

Automated Identification of Cell Type Specific Genes in the Mouse Brain by Image Computing of Expression Patterns, Rongjian Li, Wenlu Zhang, and Shuiwang Ji

PDF

A Nonrigid Registration Method for Correcting Brain Deformation Induced by Tumor Resection, Yixun Liu, Chengjun Yao, Fotis Drakopoulos, Jinsong Wu, Liangfu Zhou, and Nikos Chrisochoides

PDF

A Scalable Backward Chaining-Based Reasoner for a Semantic Web, Hui Shi, Kurt Maly, and Steven Zeil

PDF

Tracing Beta Strands Using StrandTwister from Cryo-EM Density Maps at Medium Resolutions, Dong Si and Jing He

PDF

GPU Accelerated Long-Term Simulations of Beam-Beam Effects in Colliders, B. Terzić, V. Morozov, Y. Roblin, F. Lin, H. Zhang, M. Aturban, D. Ranjan, and M. Zubair

PDF

Automatic Curvilinear Quality Mesh Generation Driven by Smooth Boundary and Guaranteed Fidelity, Jing Xu and Andrey N. Chernikov