Submissions from 2023
CellBRF: A Feature Selection Method for Single-Cell Clustering Using Cell Balance and Random Forest, Yunpei Xu, Hong-Dong Li, Cui-Xiang Lin, Ruiqing Zheng, Yaohang Li, Jinhui Xu, and Jianxin Wang
Identifying the Serious Clinical Outcomes of Adverse Reactions to Drugs by a Multi-Task Deep Learning Framework, Haochen Zhao, Peng Ni, Qichang Zhao, Xiao Liang, Di Ai, Shannon Erhardt, Jun Wang, Yaohang Li, and Jiianxin Wang
MSDRP: A Deep Learning Model Based on Multisource Data for Predicting Drug Response, Haochen Zhao, Xiaoyu Zhang, Qichang Zhao, Yaohang Li, and Jianxin Wang
Efficient GPU Implementation of Automatic Differentiation for Computational Fluid Dynamics, Mohammad Zubair, Desh Ranjan, Aaron Walden, Gabriel Nastac, Eric Nielsen, Boris Diskin, Marc Paterno, Samuel Jung, and Joshua Hoke Davis
Optimization of Ported CFD Kernels on Intel Data Center GPU Max 1550 Using oneAPI ESIMD, Mohammad Zubair, Aaron Walden, Gabriel Nastac, Eric Nielsen, Christoph Bauinger, and Xiao Zhu
Submissions from 2022
NPGREAT: Assembly of the Human Subtelomere Regions with the Use of Ultralong Nanopore Reads and Linked Reads, Eleni Adam, Desh Ranjan, and Harold Riethman
Machine Learning-Based Event Generator for Electron-Proton Scattering, Y. Alanazi, P. Ambrozewicz, M. Battaglieri, A.N. Hiller Blin, M. P. Kuchera, Y. Li, T. Liu, R. E. McClellan, W. Melnitchouk, E. Pritchard, M. Robertson, N. Sato, R. Strauss, and L. Velasco
Refinement of AlphaFold2 Models Against Experimental and Hybrid Cryo-EM Density Maps, Maytha Alshammari, Willy Wriggers, Jiangwen Sun, and Jing He
Hunter: HE-Friendly Structured Pruning for Efficient Privacy-Preserving Deep Learning, Yifei Cai, Qiao Zhang, Rui Ning, Chunsheng Xin, and Hongyi Wu
Completing Single-Cell DNA Methylome Profiles via Transfer Learning Together With KL-Divergence, Sanjeeva Dodlapati, Zongliang Jiang, and Jiangwen Sun
InSupport: Proxy Interface for Enabling Efficient Non-Visual Interaction With Web Data Records, Javedul Ferdous, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok
Segmenting Technical Drawing Figures in US Patents, Md Reshad Ul Hoque, Xin Wei, Muntabir Hasan Choudhury, Kehinde Ajayi, Martin Gryder, Jian Wu, and Diane Oyen
ArithFusion: An Arithmetic Deep Model for Temporal Remote Sensing Image Fusion, Md Reshad Ul Hoque, Jian Wu, Chiman Kwan, Krzysztof Koperski, and Jiang Li
Introducing a Real-Time Advanced Eye Movements Analysis Pipeline, Gavindya Jayawardana
StreamingHub: Interactive Stream Analysis Workflows, Yasith Jayawardana, Vikas G. Ashok, and Sampath Jayarathna
Toward a Real-Time Index of Pupillary Activity as an Indicator of Cognitive Load, Gavindya Jayawardena, Yasith Jayawardana, Sampath Jayarathna, Jonas Högström, Thomas Papa, Deepak Akkil, Andrew T. Duchowski, Vsevolod Peysakhovich, Izabela Krejtz, Nina Gehrer, and Krzysztof Krejtz
Camouflaged Poisoning Attack on Graph Neural Networks, Chao Jiang, Yi He, Richard Chapman, and Hongyi Wu
The DSA Toolkit Shines Light Into Dark and Stormy Archives, Shawn Morgan Jones, Himarsha R. Jayanetti, Alex Osborne, Paul Koerbin, Klein Martin, Michele C. Weigle, and Michael L. Nelson
DeepPatent: Large Scale Patent Drawing Recognition and Retrieval, Michal Kucer, Diane Oyen, Juan Castorena, and Jian Wu
Online Deep Learning from Doubly-Streaming Data, Heng Lian, John S. Atwood, Bo-Jian Hou, Jian Wu, and Yi He
Ready Raider One: Exploring the Misuse of Cloud Gaming Services, Guannan Liu, Daiping Liu, Shuai Hao, Xing Gao, Kun Sun, and Haining Wang
Loss of Acta2 in Cardiac Fibroblasts Does Not Prevent the Myofibroblast Differentiation or Affect the Cardiac Repair After Myocardial Infarction, Yuxia Li, Chaoyang Li, Qianglin Liu, Leshan Wang, Adam X. Bao, Jangwook P. Jung, Sanjeev Dodlapati, Jingwen Sun, Peidong Gao, Xujia Zhang, Joseph Francis, Jeffery D. Molkentin, and Xing Fu
Multi-User Eye-Tracking, Bhanuka Mahanama
Memento Validator: A Toolset for Memento Compliance Testing, Bhanuka Mahanama, Lyudmila Balakireva, Sampath Jayarathna, Michael Nelson, and Martin Klein
Eye Movement and Pupil Measures: A Review, Bhanuka Mahanama, Yasith Jayawardana, Sundararaman Rengarajan, Gavindya Jayawardena, Leanne Chukoskie, Joseph Snider, and Sampath Jayarathna
D-Lib Magazine Pioneered Web-Based Scholarly Communication, Michael L. Nelson and Herbert Van de Sompel
Is Ethereum's ProgPoW ASIC Resistant?, Jason Orender, Ravi Mukkamala, Mohammad Zubair, Steven Furnell (Ed.), Paolo Mori (Ed.), Edgar Weippl (Ed.), and Oliver Camp (Ed.)
A Synthetic Prediction Market for Estimating Confidence in Published Work, Sarah Rajtmajer, Christopher Griffin, Jian Wu, Robert Fraleigh, Laxmann Balaji, Anna Squicciarini, Anthony Kwasnica, David Pennock, Michael McLaughlin, Timothy Fritton, Nishanth Nakshatri, Arjun Menon, Sai Ajay Modukuri, Rajal Nivargi, Xin Wei, and Lee Giles
m-CUBES: An Efficient and Portable Implementation of Multi-Dimensional Integration for GPUs, Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balŝa Terzić, and Mohammad Zubair
A Study of Computational Reproducibility Using URLs Linking to Open Access Datasets and Software, Lamia Salsabil, Jian Wu, Muntabir Hasan Choudhury, William A. Ingram, Edward A. Fox, Sarah M. Rajtmajer, C. Lee Giles, Frédérique Laforest (Ed.), Raphaël Troncy (Ed.), Lionel Médini (Ed.), and Ivan Herman (Ed.)
Spaghetti Tracer: A Framework for Tracing Semiregular Filamentous Densities in 3D Tomograms, Salim Sazzed, Peter Scheible, Jing He, and Willy Wriggers
Customer Gaze Estimation in Retail Using Deep Learning, Shashimal Senarath, Primesh Pathirana, Dulani Meedeniya, and Sampath Jayarathna
Theory Entity Extraction for Social and Behavioral Sciences Papers Using Distant Supervision, Xin Wei, Lamia Salsabil, and Jian Wu
Visual Descriptor Extraction From Patent Figure Captions: A Case Study of Data Efficiency Between BiLSTM and Transformer, Xin Wei, Jian Wu, Kehinde Ajayi, and Diane Oyen
Trip Report: 2022 CCI Symposium, Jian Wu
Scholarly Big Data Quality Assessment: A Case Study of Document Linking and Conflation with S2ORC, Jian Wu, Ryan Hiltabrand, Dominik Soós, and C. Lee Giles
The Landscape of Accessible Chromatin in Quiescent Cardiac Fibroblasts and Cardiac Fibroblasts Activated After Myocardial Infarction, Chaoyang Yi, Jiangwen Sun, Qianglin Liu, Sanjeeva Dodlapati, Hao Ming, Leshan Wang, Yuxia Li, Rui Li, Zongliang Jiang, Joseph Francis, and Xing Fu
Submissions from 2021
A Survey of Machine Learning-Based Physics Event Generation, Yasir Alanazi, Nobuo Sato, Pawel Ambrozewicz, Astrid Hiller-Blin, Wally Melnitchouk, Marco Battaglieri, Tianbo Liu, and Yaohang Li
Simulation of Electron-Proton Scattering Events by a Feature-Augmented and Transformed Generative Adversarial Network (FAT-GAN), Yasir Alanazi, Nobuo Sato, Tianbo Liu, Wally Melnitchouk, Pawel Ambrozewicz, Florian Hauenstein, Michelle P. Kuchera, Evan Pritchard, Michael Robertson, Ryan Strauss, Luisa Velasco, and Yaohang Li
Systematizing Confidence in Open Research and Evidence (SCORE), Nazanin Alipourfard, Beatrix Arendt, Daniel M. Benjamin, Noam Benkler, Michael Bishop, Mark Burstein, Martin Bush, James Caverlee, Yiling Chen, Chae Clark, Anna Dreber Almenberg, Timothy M. Errington, Fiona Fidler, Nicholas Fox, Aaron Frank, Hannah Fraser, Scott Friedman, Ben Gelman, James Gentile, Jian Wu, et al., and SCORE Collaboration
Combining Cryo-EM Density Map and Residue Contact for Protein Secondary Structure Topologies, Maytha Alshammari and Jing He
Smart Parking Systems: Reviewing the Literature, Architecture and Ways Forward, Can Biyik, Zaheer Allam, Gabriele Pieri, Davide Moroni, Muftah O' Fraifer, Eoin O' Connell, Stephan Olariu, and Muhammad Khalid
Automatic Metadata Extraction Incorporating Visual Features from Scanned Electronic Theses and Dissertations, Muntabir Hasan Choudhury, Himarsha R. Jayanetti, Jian Wu, William A. Ingram, and Edward A. Fox
fMRI Feature Extraction Model for ADHD Classification Using Convolutional Neural Network, Senuri De Silva, Sanuwani Udara Dayarathna, Gangani Ariyarathne, Dulani Meedeniya, and Sampath Jayarathna
Adaptive Physics-Based Non-Rigid Registration for Immersive Image-Guided Neuronavigation Systems, Fotis Drakopoulos, Christos Tsolakis, Angelos Angelopoulos, Yixun Liu, Chengjun Yao, Kyriaki Rafailia Kavazidi, Nikolaos Foroglou, Andrey Fedorov, Sarah Frisken, Ron Kikinis, Alexandra Golby, and Nikos Chrisochoides
Recognizing Figure Labels in Patents, Ming Gong, Xin Wei, Diane Oyen, Jian Wu, and Martin Gryder
A Survey of Enabling Technologies for Smart Communities, Amna Iqbal and Stephan Olariu
Analysis of Subtelomeric REXTAL Assemblies Using QUAST, Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao, and Harold Riethman
Metadata-Driven Eye Tracking for Real-Time Applications, Yasith Jayawardana, Gavindya Jayawardena, Andrew T. Duchowski, and Sampath Jayarathna
Automated Filtering of Eye Movements Using Dynamic AOI in Multiple Granularity Levels, Gavindya Jayawardena and Sampath Jayarathna
Understanding the Impact of Encrypted DNS on Internet Censorship, Lin Jin, Shuai Hao, Haining Wang, and Chase Cotton
Large Scale Subject Category Classification of Scholarly Papers With Deep Attentive Neural Networks, Bharath Kandimalla, Shaurya Rohatgi, Jian Wu, and C. Lee Giles
Extraction and Evaluation of Statistical Information from Social and Behavioral Science Papers, Sree Sai Teja Lanka, Sarah Rajtmajer, Jian Wu, and C. Lee Giles
Understanding and Predicting Retractions of Published Work, Sai Ajay Modukuri, Sarah Rajtmajer, Anna Cinzia Squicciarini, Jian Wu, and C. Lee Giles
A Tool for Segmentation of Secondary Structures in 3D Cryo-EM Density Map Components Using Deep Convolutional Neural Networks, Yongcheng Mu, Salim Sazzed, Maytha Alshammari, Jiangwen Sun, and Jing He
Vehicular Crowdsourcing for Congestion Support in Smart Cities, Stephan Olariu
SEE-TREND: SEcurE Traffic-Related EveNt Detection in Smart Communities, Stephan Olariu and Dimitrie C. Popescu
Cybersecurity, Technology, and Society: Developing an Interdisciplinary, Open, General Education Cybersecurity Course, Brian K. Payne, Wu He, Cong Wang, D. E. Wittkower, and Hongyi Wu
DeapSECURE Computational Training for Cybersecurity Students: Improvements, Mid-Stage Evaluation, and Lessons Learned, Wirawan Purwanto, Yuming He, Jewel Ossom, Qiao Zhang, Liuwan Zhu, Karina Arcaute, Masha Sosonkina, and Hongyi Wu
Ranked List Fusion and Re-Ranking With Pre-Trained Transformers for ARQMath Lab, Shaurya Rohatgi, Jian Wu, and C. Lee Giles
PAGANI: A Parallel Adaptive GPU Algorithm for Numerical Integration, Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balša Terzić, and Mohammad Zubair
SSentiaA: A Self-Supervised Sentiment Analyzer for Classification From Unlabeled Data, Salim Sazzed and Sampath Jayarathna
Extractive Research Slide Generation Using Windowed Labeling Ranking, Athar Sefid, Prasenjit Mitra, Jian Wu, and C. Lee Giles
Parallel Anisotropic Unstructured Grid Adaptation, Christos Tsolakis, Nikos Chrisochoides, Michael A. Park, Adrien Loseille, and Todd Michal
De Novo Prediction of Drug–Target Interactions Using Laplacian Regularized Schatten p-Norm Minimization, Gaoyan Wu, Mengyun Yang, Yaohang Li, and Jianxin Wang
Towards Aiding Research by Improving Access to Electronic Theses and Dissertations from Multiple Domains, Jian Wu, William A. Ingram, and Edward A. Fox
You See What I Want You To See: Exploring Targeted Black-Box Transferability Attack for Hash-Based Image Retrieval Systems, Yanru Xiao and Cong Wang
Detecting Incentivized Review Groups With Co-Review Graph, Yubao Zhang, Shuai Hao, and Haining Wang
Submissions from 2020
SaIL: Saliency-Driven Injection of ARIA Landmarks, Ali Selman Aydin, Shirin Feiz, Vikas Ashok, and IV Ramakrishnan
Towards Making Videos Accessible for Low Vision Screen Magnifier Users, Ali Selman Aydin, Shirin Feiz, Vikas Ashok, and IV Ramakrishnan
A Saliency-Driven Video Magnifier For People With Low Vision, Ali Selman Aydin, Shirin Feiz, IV Ramakrishnan, and Vikas Ashok
Outlier Profiles of Atomic Structures Derived From X-ray Crystallography and From Cryo-electron Microscopy, Lin Chen, Jing He, and Angelo Facchiano
A Heuristic Baseline Method for Metadata Extraction from Scanned Electronic Theses and Dissertations, Muntabir H. Choudhury, Jian Wu, William A. Ingam, and Edward A. Fox
DeepFrag-k: A Fragment-Based Deep Learning Approach for Protein Fold Recognition, Wessam Elhefnawy, Min Li, Jianxin Wang, and Yaohang Li
SmartCiteCon: Implicit Citation Context Extraction from Academic Literature Using Unsupervised Learning, Chenrui Gao, Haoran Cui, Li Zhang, Jiamin Wang, Wei Lu, and Jian Wu
Opening Books and the National Corpus of Graduate Research, William A. Ingram, Edward A. Fox, and Jian Wu
Streaming Analytics and Workflow Automation for DFS, Yasith Jayawardana and Sampath Jayarathna
MementoEmbed and Raintale for Web Archive Storytelling, Shawn M. Jones, Martin Klein, Michele C. Weigle, and Michael L. Nelson
SHARI- An Integration of Tools to Visualize the Story of the Day, Shawn M. Jones, Alexander C. Nwala, Martin Klein, Michele C. Weigle, and Michael L. Nelson
Rotate-and-Press: A Non-Visual Alternative to Point-and-Click, Hae-Na Lee, Vikas Ashok, and I. V. Ramakrishnan
Repurposing Visual Input Modalities for Blind Users: A Case Study of Word Processors, Hae-Na Lee, Vikas Ashok, and I.V. Ramakrishnan
Granulosa Cell Proliferation is Inhibited by PGE2 in the Primate Ovulatory Follicle, Patric S. Lundberg, Gil J. Moskowitz, Carmel Bellacose, Esra Demirel, Heidi A. Trau, and Diane M. Duffy
TMVis: Visualizing Webpage Changes Over Time, Abigail Mabe, Dhruv Patel, Maheedhar Gunnam, Surbhi Shankar, Mat Kelly, Sawood Alam, Michael L. Nelson, and Michele C. Weigle
At the Nexus of the CNI Keynote and Rosenthal's Response: "It's Not An Easy Thing to Meet Your Maker", Michael L. Nelson
DeepMag+ : Sniffing Mobile Apps in Magnetic Field Through Deep Learning, Rui Ning, Cong Wang, ChunSheng Xin, Jiang Li, and Hongyi Wu
Smart Communities: From Sensors to Internet of Things and to a Marketplace of Services, Stephan Olariu, Nirwan Ansari (Editor), Andreas Ahrens (Editor), and Cesar Benavente-Preces (Editor)
PSU at CLEF-2020 ARQMath Track: Unsupervised Re-Ranking Using Pretraining, Shaurya Rohatgi, Jian Wu, and C. Lee Giles
A Genome-Wide Association Study of Cocaine Use Disorder Accounting for Phenotypic Heterogeneity and Gene–Environment Interaction, Jiangwen Sun, Henry R. Kranzler, Joel Gelernter, and Jinbo Bi
Extreme Ultraviolet Quasar Colours from GALEX Observations of the SDSS DR14Q Catalogue, Daniel E. Vanden Berk, Sarah C. Wesolowski, Mary J. Yeckley, Joseph M. Marcinik, Jean M. Quashnock, Lawrence M. Machia, and Jian Wu
Gabapentin Drug Misuse Signals: A Pharmacovigilance Assessment Using the FDA Adverse Event Reporting System, Rachel Vickers-Smith, Jiangwen Sun, Richard J. Charnigo, Michelle R. Lofwall, Sharon L. Walsh, and Jennifer R. Havens
Scholarly Very Large Data: Challenges for Digital Libraries (White Paper), Jian Wu and C. Lee Giles
Acknowledgement Entity Recognition in CORD-19 Papers, Jian Wu, Pei Wang, Xin Wei, Sarah Rajtmajer, C. Lee Giles, and Christopher Griffin
Evade Deep Image Retrieval by Stashing Private Images in the Hash Space, Yanru Xiao, Cong Wang, and Xing Gao
GangSweep: Sweep Out Neural Backdoors by GAN, Liuwan Zhu, Rui Ning, Cong Wang, Chunsheng Xin, and Hongyi Wu
Submissions from 2019
Impact of HTTP Cookie Violations in Web Archives, Sawood Alam, Michele C. Weigle, and Michael L. Nelson
MementoMap: An Archive Profile Dissemination Framework, Sawood Alam, Michele C. Weigle, and Michael L. Nelson
EEG-Based Processing and Classification Methodologies for Autism Spectrum Disorder: A Review, Gunavaran Brihadiswaran, Dilantha Haputhanthri, Sahan Gunathilaka, Dulani Meedeniya, and Sampath Jayarathna
Dormant Pathogenic CD4(+) T Cells Are Prevalent in the Peripheral Repertoire of Healthy Mice, Anna Cebula, Michal Kuczma, Edyta Szurek, Maciej Pietrzak, Natasha Savage, Wessam R. Elhefnawy, Grzegorz Rempala, Piotr Kraj, and Leszek Ignatowicz
Multi-View Cluster Analysis With Incomplete Data to Understand Treatment Effects, Guoqing Chao, Jiangwen Sun, Jin Lu, An-Li Wang, Daniel D. Langleben, Chiang-Shan Li, and Jinbo Bi
A Survey of Attention Deficit Hyperactivity Disorder Identification Using Psychophysiological Data, S. De Silva, S. Dayarathna, G. Ariyarathne, D. Meedeniya, and Sampath Jayarathna