Submissions from 2025
GramSeq-DTA: A Grammar-Based Drug-Target Affinity Prediction Approach Fusing Gene Expression Information, Kasul Debnath, Pratip Rana, and Preetam Ghosh
Foundation Models in Bioinformatics, Fei Guo, Renchu Guan, Yaohang Li, Qi Liu, Xiaowo Wang, Can Yang, and Jianxin Wang
Can Language Models Reason About ICD Codes to Guide the Generation of Clinical Notes?, Ivan Makohon, Jian Wu, Bintao Feng, and Yaohang Li
Heterogeneous Clustering of Multiomics Data for Breast Cancer Subgroup Classification and Detection, Joseph Pateras, Musaddiq Lodi, Pratip Rana, and Preetam Ghosh
Optimizing AI Language Models: A Study of ChatGPT-4 vs. ChatGPT-4o, Md Nurul Absar Siddiky, Muhammad Enayetur Rahman, MD Fayaz Bin Hossen, Muhammad Rezaur Rahman, and Md. Shahadat Jaman
Prediction-Based Adaptive Variable Ordering Heuristics for Constraint Satisfaction Problems, Jitao Xu, Yaling Wu, Hongbo Li, and Minghao Yin
Prompt-Based Learning for Few-Shot Class-Incremental Learning, Jicheng Yuan, Hang Chen, Songsong Tian, Wenfa Li, Lusi Li, Enhao Ning, and Yugui Zhang
LRTM Left-Right Transition Matrices for Molecular Interaction Prediction, Kaitlin Zheng, Guihua Duan, Mengyun Yang, Wei Wu, Yao-Hang Li, and Jianxin Wang
Submissions from 2024
A-DisETrac Advanced Analytic Dashboard for Distributed Eye Tracking, Yasasi Abeysinghe, Bhanuka Mahanama, Gavindya Jayawardena, Yasith Jayawardena, Mohan Sunkara, Andrew T. Duchowski, Vikas Ashok, and Sampath Jayarathna
Forecasting Crude Oil Price Using Multiple Factors, Hind Aldabagh, Xianrong Zheng, Mohammad Najand, and Ravi Mukkamala
Autonomous Strike UAVs for Counterterrorism Missions: Challenges and Preliminary Solutions, Meshari Aljohani, Ravi Mukkamala, and Stephan Olariu
Autonomous Strike UAVs in Support of Homeland Security Missions: Challenges and Preliminary Solutions, Meshari Aljohani, Ravi Mukkamala, and Stephan Olariu
Artificial Intelligence for the Electron Ion Collider (AI4EIC), C. Allaire, R. Ammendola, E.-C. Aschenauer, M. Balandat, M. Battaglieri, J. Bernauer, M. Bondì, N. Branson, T. Britton, A. Butter, I. Chahrour, P. Chatagnon, E. Cisbani, E. W. Cline, S. Dash, C. Dean, W. Deconinck, A. Deshpande, M. Diefenthaler, R. Ent, C. Fanelli, M. Finger, M. Finger Jr., E. Fol, S. Furletov, Y. Gao, J. Giroux, N. C. Gunawardhana Waduge, O. Hassan, P. L. Hegde, R. J. Hernandez-Pinto, A. Hiller Blin, T. Horn, J. Huang, A. Jalotra, D. Jayakodige, B. Joo, M. Junaid, N. Kalantarians, P. Karande, B. Kriesten, R. Kunnawalkam Elayavalli, Y. Li, M. Lin, F. Liu, S. Liuti, G. Matousek, M. McEneaney, D. McSpadden, T. Menzo, T. Miceli, V. Mikuni, R. Montgomery, B. Nachman, R. R. Nair, J. Niestroy, S. A. Ochoa Oregon, J. Oleniacz, J. D. Osborn, C. Paudel, C. Pecar, C. Peng, G. N. Perdue, W. Phelps, M. L. Purschke, H. Rajendran, K. Rajput, Y. Ren, D. F. Renteria-Estrada, D. Richford, B. J. Roy, D. Roy, A. Saini, N. Sato, T. Satogata, G. Sborlini, M. Schram, D. Shih, J. Singh, R. Singh, A. Siodmok, J. Stevens, P. Stone, L. Suarez, K. Suresh, A. -N. Tawfik, F. Torales Acosta, N. Tran, R. Trotta, F. J. Twagirayezu, R. Tyson, S. Volkova, A. Vossen, E. Walter, D. Whiteson, M. Williams, S. Wu, N. Zachariou, and P. Zurita
Flexible Fitting of AlphaFold2-Predicted Models to Cryo-EM Density Maps Using Elastic Network Models: A Methodological Affirmation, Maytha Alshammari, Jing He, and Willy Wriggers
EXACFS - A CIL Method to Mitigate Catastrophic Forgetting, S. Balasubramanian, Sai Subramaniam M., Sai Sriram Talasu, Manepalli Pranav Phanindra Sai, Yedu P. Krishna, Darshan Gera, and Ravi Mukkamala
MOSAIC: A Prune-and-Assemble Approach for Efficient Model Pruning in Privacy-Preserving Deep Learning, Yifei Cai, Qiao Zhang, Rui Ning, Chunsheng Xin, and Hongyi Wu
ETDPC: A Multimodality Framework for Classifying Pages in Electronic Theses and Dissertations, Muntabir Hasan Choudhury, Lamia Salsabil, William A. Ingram, Edward A. Fox, and Jian Wu
Developing a Framework for Personalized Video-Based Quantum Information Science Education, Nikos Chrisochoides, Norou Diawara, and Michail Giannakos
Gaze Transition Entropy as a Measure of Attention Allocation in a Dynamic Workspace Involving Automation, Zixin Cui, Tetsuya Sato, Austin Jackson, Sampath Jayarathna, Makoto Itoh, and Yusuke Yamani
Identifying New Cancer Genes Based on the Integration of Annotated Gene Sets Via Hypergraph Neural Networks, Chao Deng, Hong-Dong Li, Li-Shen Zhang, Yiwei Liu, Yaohang Li, and Jianxin Wang
A Chinese Power Text Classification Algorithm Based on Deep Active Learning, Song Deng, Qianliang Li, Renjie Dai, Siming Wei, Di Wu, Yi He, and Xindong Wu
Image-to-Mesh Conversion Method For Multi-Tissue Medical Image Computing Simulations, Fotis Drakopoulos, Yixun Liu, Kevin Garner, and Nikos Chrisochoides
Retrogressive Document Manipulation of US Federal Environmental Websites, Lesley Frew, Michael L. Nelson, and Michele C. Weigle
Charged Track Reconstruction with Artificial Intelligence for CLAS12, Gagik Gavalian, Polykarpos Thomadakis, Angelos Angelopoulos, and Nikos Chrisochoides
Bayesian Neural Netwok Variational Autoencoder Inverse Mapper (BNN-VAIM) and its Application in Compton Form Factors Extraction, MD Fayaz Bin Hossen, Tareq Alghamdi, Manal Almaeen, and Yaohang Li
HiTE: A Fast and Accurate Dynamic Boundary Adjustment Approach for Full-Length Transposable Element Detection and Annotation, Kang Hu, Peng Ning, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, and Jianxin Wang
Building Datasets to Support Information Extraction and Structure Parsing from Electronic Theses and Dissertations, William A. Ingram, Jian Wu, Sampanna Yashwant Kahu, Javaid Akbar Manzoor, Bipasha Banerjee, Aman Ahuja, Muntabir Hasan Choudhury, Lamia Salsabil, Winston Shields, and Edward A. Fox
Sub-Band Backdoor Attack in Remote Sensing Imagery, Kazi Aminul Islam, Hongyi Wu, Chunsheng Xin, Rui Ning, Liuwan Zhu, and Jiang Li
Evaluating Social Media Reach Via Mainstream Media Discourse, Himarsha R. Jayanetti
Robots Still Outnumber Humans in Web Archives in 2019, But Less Than In 2015 and 2012, Himarsha R. Jayanetti, Kritika Garg, Sawood Alam, Michael L. Nelson, and Michele C. Weigle
Enhancing Research Productivity: Seamless Integration of Personal Devices and HPC Resources with the Cybershuttle Notebook Gateway, Yasith Jayawardana, Dimuthu Wannipurage, Eroma Abeysinghe, and Suresh Marru
GLDL: Graph Label Distribution Learning, Yufei Jin, Richard Gao, Yi He, and Xingquan Zhu
Identifying Patterns for Neurological Disabilities by Integrating Discrete Wavelet Transform and Visualization, Soo Yeon Ji, Sampath Jayarathna, Anne M. Perrotti, Katrina Kardiasmenos, and Dong Hyun Jeong
Can Large Language Models Discern Evidence for Scientific Hypotheses? Case Studies in the Social Sciences, Sai Koneru, Jian Wu, and Sarah Rajtmajer
Improving Query Performance in RaaS: A Framework for Reputation As a Service in Decentralized Marketplaces, Ravi Mukkamala, Stephan Olario, and Meshari Aljohani
The Combined Focal Loss and Dice Loss Function Improves the Segmentation of Beta-Sheets in Medium-Resolution Cryo-Electron-Microscopy Density Maps, Yongcheng Mu, Thu Nguyen, Bryan Hawickhorst, Willy Wriggers, Jiangwen Sun, and Jing He
Large-Scale Computational Fluid Dynamics Simulations of Aerospace Configurations on the Frontier Exascale System, Eric J. Nielsen, Aaron Walden, Gabriel Nastac, Li Wang, William Jones, Mark Lohry, William K. Anderson, Boris Diskin, Yi Liu, Christopher L. Rumsey, Prahladh Iyer, Patrick Moran, and Mohammad Zubair
DILF: Differentiable Rendering-Based Multi-View Image-Language Fusion for Zero-Shot 3D Shape Understanding, Xin Ning, Zaiyang Yu, Lusi Li, Weijun Li, and Prayag Tiwari
Short: Can Citations Tell Us About a Paper's Reproducibility? A Case Study of Machine Learning Papers, Rochana R. Obadage, Sarah M. Rajtmajer, and Jian Wu
Towards Trust and Reputation as a Service in Society 5.0, Stephan Olariu, Ravi Mukkamala, and Meshari Aljohani
Enhanced Skin Cancer Diagnosis Through Grid Search Algorithm-Optimized Deep Learning Models for Skin Lesion Analysis, Rudresh Pillai, Neha Sharma, Sheifali Gupta, Deepali Gupta, Sapna Juneja, Saurav Malik, Hong Qin, Mohammed S. Alqahtani, and Amel Ksibi
Improving Usability of Data Charts In Multimodal Documents for Low Vision Users, Yash Prakash, Akshay Kolgar Nayak, Shoaib Mohammed Alyaan, Pathan Aseef Khan, Hae-Na Lee, and Vikas Ashok
Understaning Low Vision Graphical Perception of Bar Charts, Yash Prakash, Akshay Kolgar Nayak, Sampath Jayarathna, Hae-Na Lee, and Vikas Ashok
All in One Place: Ensuring Usable Access to Online Shopping Items for Blind Users, Yash Prakash, Akshay Kolgar Nayak, Mohan Sunkara, Sampath Jayarathna, Hae-Na Lee, and Vikas Ashok
Using to CoSAI Ecosystem to Archive Scholarly Code with Docs and Discussions, Vicky Rampin, Tayla Cooper, Martin Klein, David Wilkinson, Lyudmila Balakireva, Emily Escamilla, David Calano, Michael L. Nelson, and Michele C. Weigle
Learning Optimal Inter-Class Margin Adaptively For Few-Shot Class-Incremental Learning Via Neural Collapse-Based Meta-Learning, Hang Ran, Weijun Li, Lusi Li, Songsong Tian, Xin Ning, and Prayag Tiwari
Archiving Digital Marketing: Examining Preservation of Dynamic Content on the Web Through the Lens of Online Advertisements, Christopher Rauch, Alex H. Poole, Travis Reid, Michele C. Weigle, Michael L. Nelson, Faryaneh Poursardar, and Mat Kelly
Enhancing Heart Disease Prediction With Reinforcement Learning and Data Augmentation, Gayathri R., Sangeetha S. K. B., Sandeep Kumar Mathivanan, Hariharan Rajadurai, Benjula Anbu Malar MB, Saurav Mallik, and Hong Qin
Quantification of Landside Congestion in Ports: An Analysis Based on GPS Data, Kumushini Thennakoon, Namal Bandaranayake, Senevi Kiridena, and Asela K. Kulatunga
Runtime Support for CPU-GPU High-Performance Computing On Distributed Memory Platforms, Polykarpos Thomadakis and Nikos Chrisochoides
A Survey on Few-Shot Class-Incremental Learning, Songsong Tian, Lusi Li, Weijun Li, Hang Ran, Xin Ning, and Prayag Tiwari
Speculative Anisotropic Mesh Adaptation on Shared Memory for CFD Applications, Christos Tsolakis and Nikos Chrisochoides
FAIRiCat: Supporting Discovery of a Repository's Interoperability Affordances, Herbert Van de Sompel, Robert Huber, Patrick Hochstenbach, Michael L. Nelson, Martin Klein, Andrea Bollini, Enno Meijers, Petr Knoth, Paul Walk, Wim Hugo, and Jim Meyers
You Shall Know a Forum by the Words they Keep: Analyzing Language Use in Accessibility Forums for Blind Users, Nithiya Venkatraman, Anand Aiyer, Yash Prakash, and Vikas Ashok
TripHLApan: Predicting HLA Molecules Binding Peptides Based on Triple Coding Matrix and Transfer Learning, Meng Wang, Chuqi Lei, Jianxin Wang, Yaohang Li, and Min Li
MKG-FENN: A Multimodal Knowledge Graph Fused End-To-End Neural Network for Accurate Drug-Drug Interaction Prediction, Di Wu, Wu Sun, Yi He, Zhong Chen, and Xin Luo
ScCAD: Cluster Decomposition-Based Anomaly Detection for Rare Cell Identification in Single-Cell Expression Data, Yunpei Xu, Shaokai Wang, Qilong Feng, Jiazhi Xia, Yaohang Li, Hong-Dong Li, and Jianxin Wang
OSFS-Vague: Online Streaming Feature Selection Algorithm Based on a Vague Set, Jie Yang, Zhijun Wang, Guoyin Wang, Yanmin Liu, Yi He, and Di Wu
SEER: Backdoor Detection for Vision-Language Models Through Searching Target Text and Image Trigger Jointly, Liuwan Zhu, Rui Ning, Jiang Li, Chunsheng Xin, and Hongyi Wu
Submissions from 2023
Evaluating Human Eye Features for Objective Measure of Working Memory Capacity, Yasasi Abeysinghe, Enkelejda Kasneci (Ed.), Frederick Shic (Ed.), and Mohamed Khamis (Ed.)
DeepPatent2: A Large-Scale Benchmarking Corpus for Technical Drawing Understanding, Kehinde Ajayi, Xin Wei, Martin Gryder, Winston Shields, Jian Wu, Shawn M. Jones, Michal Kucer, and Diane Oyen
A Hybrid Deep Learning Approach for Crude Oil Price Prediction, Hind Aldabagh, Xianrong Zheng, and Ravi Mukkamala
Toward a Generative Modeling Analysis of CLAS Exclusive 2𝜋 Photoproduction, T. Alghamdi, Y. Alanazi, M. Battaglieri, Ł. Bibrzycki, A. V. Golda, A. N. Hiller Blin, E. L. Isupov, Y. Li, L. Marsicano, W. Melnitchouk, V. I. Mokeev, G. Montaña, A. Pilloni, N. Sato, A. P. Szczepaniak, and T. Vittorini
Mitigating Anomalous Electricity Consumption in Smart Cities Using an AI-Based Stacked-Generalization Technique, Arshid Ali, Laiq Khan, Nadeem Javaid, Safdar Hussain Bouk, Abdulaziz Aldegheishem, and Nabil Alrahjeh
AlphaFold2 Model Refinement Using Structure Decoys, Maytha Alshammari, Jing He, and Willy Wriggers
Hashes Are Not Suitable to Verify Fixity of the Public Archived Web, Mohamed Aturban, Martin Klein, Herbert Van de Sompel, Sawood Alam, Michael L. Nelson, and Michele C. Weigle
Comparison of Physics-Based Deformable Registration Methods for Image-Guided Neurosurgery, Nikos Chrisochoides, Yixun Liu, Fotis Drakopoulos, Andriy Kot, Panos Foteinos, Christos Tsolakis, Emmanuel Billias, Olivier Clatz, Nicholas Ayache, Andrey Fedorov, Alex Golby, Peter Black, and Ron Kikinis
MSVEC: A Multidomain Testing Dataset for Scientific Claim Verification, Michael Evans, Dominik Soós, Ethan Landers, and Jian Wu
Enabling Efficient Web Data-Record Interaction for People with Visual Impairments via Proxy Interfaces, Javedul Ferdous, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok
Charged Track Reconstruction with Artificial Intelligence for CLAS12, Gagik Gavalian, Polykarpos Thomadakis, Angelos Angelopoulos, and Nikos Chrisochoides
A Structure-Aware Generative Adversarial Network for Bilingual Lexicon Induction, Bocheng Han, Qian Tao, Lusi Li, and Zhihao Xiong
Summarizing Web Archive Corpora Via Social Media Storytelling By Automatically Selecting and Visualizing Exemplars, Shawn M. Jones, Martin Klein, Michele C. Weigle, and Michael L. Nelson
Detecting Deceptive Dark-Pattern Web Advertisements for Blind Screen-Reader Users, Satwick Ram Kodandaram, Mohan Sunkara, Sampath Jayarathna, and Vikas Ashok
Dial "N" for NXDomain: The Scale, Origin, and Security Implications of DNS Queries to Non-Existent Domains, Gunnan Liu, Lin Jin, Shuai Hao, Yubao Zhang, Daiping Liu, Angelos Stavrou, and Haining Wang
Tcf21 Marks Visceral Adipose Mesenchymal Progenitors and Functions as a Rate-Limiting Factor During Visceral Adipose Tissue Development, Qianglin Liu, Chaoyang Li, Buhao Deng, Peidong Gao, Leshan Wang, Yuxia Li, Mohammad Shiri, Fozi Alkaifi, Junxing Zhao, Jacqueline M. Stephens, Constantine A. Simintiras, Joseph Francis, Jiangwen Sun, and Xing Fu
Progenitor Cell Isolation From Mouse Epididymal Adipose Tissue and Sequencing Library Construction, Qianglin Liu, Chaoyang Li, Yuxia Li, Leshan Wang, Xujia Zhang, Buhao Deng, Peidong Gao, Mohammad Shiri, Fozi Alkaifi, Junxing Zhao, Jacqueline M. Stephens, Constantine A. Simintiras, Joseph Francis, Jiangwen Sun, and Xing Fu
A Structured Narrative Prompt for Prompting Narratives from Large Language Models: Sentiment Assessment of ChatGPT-Generated Narratives and Real Tweets, Christopher J. Lynch, Erik J. Jensen, Virginia Zamponi, Kevin O'Brien, Erika Frydenlund, and Ross Gore
An Approach to Developing Benchmark Datasets for Protein Secondary Structure Segmentation from Cryo-EM Density Maps, Thu Nguyen, Yongcheng Mu, Jiangwen Sun, and Jing He
Exploring TikTok as an Educational Tool for Speech-Language Pathologists, Special Education, and General Education, Anne Marie Perrotti, Isabelle Puwo, and Sampath Jayarathna
AutoDesc: Facilitating Convenient Perusal of Web Data Items for Blind Users, Yash Prakash, Mohan Sunkara, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok
Intergenic Transcription in In Vivo Developed Bovine Oocytes and Pre-Implantation Embryos, Saurav Ranjitkar, Mohammad Shiri, Jiangwen Sun, and Xiuchun Tian
Unttangling Irregular Actin Cytoskeleton Architectures in Tomograms of the Cell with Struwwel Tracer, Salim Sazzed, Peter Scheible, Jing He, and Willy Wriggers
Enabling Customization of Discussion Forums for Blind Users, Mohan Sunkara, Yash Prakash, Hae-Na Lee, Sampath Jayarathna, and Vikas Ashok
Kumushini Thennakoon (Computer Science PhD Student), Kumushini Thennakoon
FAIR Signposting Profile, Herbert Van de Sompel, Martin Klein, Shawn Jones, Michael L. Nelson, Simeon Warner, Anusuriya Devaraju, Robert Huber, Wilko Steinhoff, Vyacheslav Tykhonov, Luc Boruta, Enno Meijers, Stian Soiland-Reyes, and Mark Wilkonson
DFHiC: A Dilated Full Convolution Model to Enhance the Resolution of Hi-C Data, Bin Wang, Kun Liu, Yaohang Li, and Jianxin Wang
A Single-Cell Atlas of Bovine Skeletal Muscle Reveals Mechanisms Regulating Intramuscular Adipogenesis and Fibrogenesis, Leshan Wang, Peidong Gao, Chaoyag Li, Qianglin Liu, Zeyang Yao, Yuxia Li, Xujia Zhang, Jiangwen Sun, Constantine Simintiras, Matthew Welborn, Kenneth McMillin, Stephanie Oprescu, Shihuan Kuang, and Xing Fu
A Single-Cell Atlas of Bovine Skeletal Muscle Reveals Mechanisms Regulating Intramuscular Adipogenesis and Fibrogenesis, Leshan Wang, Peidong Gao, Chaoyang Li, Qianglin Liu, Zeyang Yao, Yuxia Li, Xujia Zhang, Jiangwen Sun, Constantine Simintiras, Matthew Welborn, Kenneth McMillin, Stephanie Oprescu, Shihuan Kuang, and Xing Fu
ClaimDistiller: Scientific Claim Extraction with Supervised Contrastive Learning, Xin Wei, Md Reshad Ul Hoque, Jian Wu, and Jiang Li
CellBRF: A Feature Selection Method for Single-Cell Clustering Using Cell Balance and Random Forest, Yunpei Xu, Hong-Dong Li, Cui-Xiang Lin, Ruiqing Zheng, Yaohang Li, Jinhui Xu, and Jianxin Wang
Identifying the Serious Clinical Outcomes of Adverse Reactions to Drugs by a Multi-Task Deep Learning Framework, Haochen Zhao, Peng Ni, Qichang Zhao, Xiao Liang, Di Ai, Shannon Erhardt, Jun Wang, Yaohang Li, and Jiianxin Wang
MSDRP: A Deep Learning Model Based on Multisource Data for Predicting Drug Response, Haochen Zhao, Xiaoyu Zhang, Qichang Zhao, Yaohang Li, and Jianxin Wang
Efficient GPU Implementation of Automatic Differentiation for Computational Fluid Dynamics, Mohammad Zubair, Desh Ranjan, Aaron Walden, Gabriel Nastac, Eric Nielsen, Boris Diskin, Marc Paterno, Samuel Jung, and Joshua Hoke Davis
Optimization of Ported CFD Kernels on Intel Data Center GPU Max 1550 Using oneAPI ESIMD, Mohammad Zubair, Aaron Walden, Gabriel Nastac, Eric Nielsen, Christoph Bauinger, and Xiao Zhu
Submissions from 2022
NPGREAT: Assembly of the Human Subtelomere Regions with the Use of Ultralong Nanopore Reads and Linked Reads, Eleni Adam, Desh Ranjan, and Harold Riethman
Machine Learning-Based Event Generator for Electron-Proton Scattering, Y. Alanazi, P. Ambrozewicz, M. Battaglieri, A.N. Hiller Blin, M. P. Kuchera, Y. Li, T. Liu, R. E. McClellan, W. Melnitchouk, E. Pritchard, M. Robertson, N. Sato, R. Strauss, and L. Velasco
Refinement of AlphaFold2 Models Against Experimental and Hybrid Cryo-EM Density Maps, Maytha Alshammari, Willy Wriggers, Jiangwen Sun, and Jing He
Hunter: HE-Friendly Structured Pruning for Efficient Privacy-Preserving Deep Learning, Yifei Cai, Qiao Zhang, Rui Ning, Chunsheng Xin, and Hongyi Wu
Completing Single-Cell DNA Methylome Profiles via Transfer Learning Together With KL-Divergence, Sanjeeva Dodlapati, Zongliang Jiang, and Jiangwen Sun