A selection of publications from faculty in the Computer Science Department at Old Dominion University.

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Submissions from 2017

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Impact of URI Canonicalization on Memento Count, Mat Kelly, Lulwah M. Alkwai, Michael L. Nelson, Michele C. Weigle, and Herbert Van De Sompel

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Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps, Dong Si and Jing He

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Homeomorphic Tetrahedralization of Multi-material Images with Quality and Fidelity Guarantees, Jing Xu and Andrey N. Chernikov

Submissions from 2016

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Leveraging Heritrix and the Wayback Machine on a Corporate Intranet: A Case Study on Improving Corporate Archives, Justin F. Brunelle, Krista Ferrante, Eliot Wilczek, Michele C. Weigle, and Michael L. Nelson

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A Hybrid Parallel Delaunay Image-to-Mesh Conversion Algorithm Scalable on Distributed-memory Clusters, Daming Feng, Andrey N. Chernikov, and Nikos Chrisochoides

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Big Data-Enabled Multiscale Serviceability Analysis for Aging Bridges, Yu Liang, Dalei Wu, Guirong Liu, Yaohang Li, Cuilan Gao, Zhongguo John Ma, and Weidong Wu

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A Hybrid Algorithm Based on Optimal Quadratic Spline Collocation and Parareal Deferred Correction for Parabolic PDEs, Jun Liu, Yan Wang, and Rongjian Li

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RCD+: Fast Loop Modeling Server, José R. López-Blanco, Alejandro J. Canosa-Valis, Yaohang Li, and Pablo Chacón

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FLEXc: Protein Flexibility Prediction Using Context-Based Statistics, Predicted Structural Features, and Sequence Information, Ashraf Yaseen, Mais Nijim, Brandon Williams, Lei Qian, Min Li, Jianxin Wang, and Yaohang Li

Submissions from 2015

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Tetrahedral Image-to-Mesh Conversion Software for Anatomic Modeling of Arteriovenous Malformations, Fotis Drakopoulos, Ricardo Ortiz, Andinet Enquobahrie, Deanna Sasaki-Adams, and Nikos Chrisochoides

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Scalable 3D Hybrid Parallel Delaunay Image-to-Mesh Conversion Algorithm for Distributed Shared Memory Architectures, Daming Feng, Christos Tsolakis, Andrey N. Chernikov, and Nikos P. Chrisochoides

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Making Sense of Video Analytics: Lessons Learned from Clickstream Interactions, Attitudes, and Learning Outcome in a Video-Assisted Course, Michail N. Giannakos, Konstantinos Chorianopoulos, and Nikos Chrisochoides

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Reminiscing About 15 Years of Interoperability Efforts, Herbert Van de Sompel and Michael L. Nelson

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Deep Convolutional Neural Networks for Annotating Gene Expression Patterns in the Mouse Brain, Tao Zeng, Rongjian Li, Ravi Mukkamala, Jieping Ye, and Shuiwang Ji

Submissions from 2014

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Toward a Real Time Multi-Tissue Adaptive Physics Based Non-Rigid Registration Framework for Brain Tumor Resection, Fotis Drakopoulos, Panagiotis Foteinos, Yixun Liu, and Nikos Chrisochoides

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Automated Identification of Cell Type Specific Genes in the Mouse Brain by Image Computing of Expression Patterns, Rongjian Li, Wenlu Zhang, and Shuiwang Ji

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A Scalable Backward Chaining-Based Reasoner for a Semantic Web, Hui Shi, Kurt Maly, and Steven Zeil

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GPU Accelerated Long-Term Simulations of Beam-Beam Effects in Colliders, B. Terzić, V. Morozov, Y. Roblin, F. Lin, H. Zhang, M. Aturban, D. Ranjan, and M. Zubair

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Automatic Curvilinear Quality Mesh Generation Driven by Smooth Boundary and Guaranteed Fidelity, Jing Xu and Andrey N. Chernikov

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Template-Based C8-Scorpion: A Protein 8 State Secondary Structure Prediction Method Using Structural Information and Context-Based Features, Ashraf Yaseen and Yaohang Li

Submissions from 2013

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The 6th Computational Structural Bioinformatics Workshop Introduction, Jing He, Amarda Shehu, Nurit Haspel, and Brian Chen

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Convergence Analysis of Markov Chain Monte Carlo Linear Solvers Using Ulam--von Neumann Algorithm, Hao Ji, Michael Mascagni, and Yaohang Li

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Computational Genetic Neuroanatomy of the Developing Mouse Brain: Dimensionality Reduction, Visualization, and Clustering, Shuiwang Ji

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A Method for Identifying Personalized Representations in Web Archives, Mat Kelly, Justin F. Brunelle, Michele C. Weigle, and Michael L. Nelson

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Conformational Sampling in Template Free Protein Loop Structure Modeling: An Overview, Yaohang Li

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Estimating Loop Length from CryoEM Images at Medium Resolutions, Andrew McKnight, Dong Si, Kamal Al Nasr, Andrey Chemikov, Nikos Chrisochoides, and Jing He

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Image-Level and Group-Level Models for Drosophila Gene Expression Pattern Annotation, Quian Sun, Sherin Muckatira, Lei Yuan, Shuiwang Ji, Stuart Newfeld, Sudhir Kumar, and Jieping Ye

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Dinosolve: A Protein Disulfide Bonding Prediction Server Using Context-Based Features to Enhance Prediction Accuracy, Ashraf Yaseen and Yaohang Li

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A Mesh Generation and Machine Learning Framework for Drosophila Gene Expression Pattern Image Analysis, Wenlu Zhang, Daming Feng, Rongjian Li, Andrey Chernikov, Nikos Chrisochoides, Christopher Osgood, Charlotte Konikoff, Stuart Newfeld, Sudhir Kumar, and Shuiwang Ji

Submissions from 2012

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Generalized Insertion Region Guides for Delaunay Mesh Refinement, Andrey Chernikov and Nikos Chrisochoides

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Cooperation as a Service in VANET: Implementation and Simulation Results, Hajar Mousannif, Ismail Khalil, and Stephan Olariu

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Learning Sparse Representations for Fruit Fly Gene Expression Pattern Image Annotation and Retreival, Lei Yuan, Alexander Woodard, Shuiwang Ji, Yuan Jiang, Zhi-Hua Zhou, Sudhir Kumar, and Jieping Ye

Submissions from 2011

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Multitissue Tetrahedral Image-to-Mesh Conversion with Guaranteed Quality and Fidelity, Andrey N. Chernikov and Nikos P. Chrisochoides

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User Experiments of a Social, Faceted Multimedia Classification System, LiuLiu Fu, Kurt Maly, Elizabeth Rasnick, Harris Wu, and Mohammad Zubair

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From Isotropic to Anisotropic Side Chain Representations: Comparison of Three Models for Residue Contact Estimation, Weitao Sun and Jing He

Submissions from 2010

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Fully Generalized Two-Dimensional Constrained Delaunay Mesh Refinement, Panagiotis A. Foteinos, Andrey N. Chernikov, and Nikos P. Chrisochoides

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Improving Predicted Protein Loop Structure Ranking Using a Pareto-Optimality Consensus Method, Yaohang Li, Ionel Rata, See-Wing Chiu, and Erik Jakobsson

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Structure Prediction for the Helical Skeletons Detected from the Low Resolution Protein Density Map, Kamal Al Nasr, Weitao Sun, and Jing He

Submissions from 2009

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Multicast Encryption Infrastructure for Security in Sensor Networks, Richard R. Brooks, Brijesh Pillai, Matthew Pirretti, and Michele C. Weigle

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Evaluating Multicore Algorithms on the Unified Memory Model, John E. Savage and Mohammad Zubair

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Adding eScience Assets to the Data Web, Herbert H. Van de Sompel, Carl Lagoze, Michael L. Nelson, Simeon Warner, Robert Sanderson, and Pete Johnston

Submissions from 2008

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Emergent Behavior in Massively-Deployed Sensor Networks, Ekaterina Shurkova, Ruzana Ishak, Stephan Olariu, and Shaharuddin Salleh

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Creating Preservation-Ready Web Resources, Joan A. Smith and Michael L. Nelson

Submissions from 2007

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Optimal Layout of Multicast Groups Using Network Embedded Multicast Security in Ad Hoc Sensor Networks, Richard R. Brooks, Brijesh Pillai, Michele C. Weigle, and Matthew Pirretti

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Hybrid Training With Binary Search Protocol for Wireless Sensor Networks, Ruzana Ishak, Qingwen Xu, Stephan Olariu, and Shaharuddin Salleh

Submissions from 2006

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SPLAI: Computational Finite Element Model for Sensor Networks, Ruzana Ishak, Shadaruddin Salleh, Stephan Olariu, and Mohd.Ismail Abdul Aziz

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FeDCOR: An Institutional CORDRA Registry, Giridhar Manepalli, Henry Jerez, and Michael L. Nelson

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Observed Web Robot Behavior on Decaying Web Subsites, Joan A. Smith, Frank McCown, and Michael L. Nelson

Submissions from 2005

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Lessons Learned with Arc, an OAI-PMH Service Provider, Xiaoming Liu, Kurt Maly, and Michael L. Nelson

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Final Report for the Development of the NASA Technical Report Server (NTRS), Michael L. Nelson

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Archive Ingest and Handling Test, Michael L. Nelson, Johan Bollen, Giridhar Manepalli, and Rabia Haq

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Protecting the Communication Structure in Sensor Networks, S. Olariu, Q. Xu, M. Eltoweissy, and A. Wadaa

Submissions from 2004

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Metadata and Buckets in the Smart Object, Dumb Archive (SODA) Model, Michael L. Nelson, Kurt Maly, Delwin R. Croom Jr., and Steven W. Robbins

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Resource Harvesting Within the OAI-PMH Framework, Herbert Van de Sompel, Michael L. Nelson, Carl Lagoze, and Simeon Warner

Submissions from 2003

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Report on the Third ACM/IEEE Joint Conference on Digital Libraries (JCDL), Michael L. Nelson

Submissions from 2002

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Fast Inner Product Computation on Short Buses, R. Lin and S. Olariu

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A Scalable Architecture for Harvest-Based Digital Libraries, Xiaoming Liu, Tim Brody, Stevan Harnard, Les Carr, Kurt Maly, Mohammad Zubair, and Michael L. Nelson

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Federated Searching Interface Techniques for Heterogeneous OAI Repositories, Xiaoming Liu, Kurt Maly, Mohammad Zubair, Qiaoling Hong, Michael L. Nelson, Frances Knudson, and Irma Holtkamp

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Object Persistence and Availability in Digital Libraries, Michael L. Nelson and B. Danette Allen

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The Single Row Routing Problem Revisited: A Solution Based on Genetic Algorithms, Albert Y. Zomaya, Roger Karpin, and Stephan Olariu

Submissions from 2001

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Arc - An OAI Service Provider for Digital Library Federation, Xiaoming Liu, Kurt Maly, Mohammad Zubair, and Michael L. Nelson

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Buckets: Smart Objects for Digital Libraries, Michael L. Nelson

A Survey of Complex Object Technologies for Digital Libraries, Michael L. Nelson, Brad Argue, Miles Efron, Shelia Denn, and Maria Cristina Pattuelli

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Smart Objects and Open Archives, Michael L. Nelson and Kurt Maly

Submissions from 2000

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The UPS Prototype: An Experimental End-User Service Across E-Print Archives, Herbert Van de Sompel, Thomas Krichel, Michael L. Nelson, Patrick Hochstenbach, Victor Lyapunov, Kurt Maly, Mohammad Zubair, Mohamed Kholief, Xiaoming Liu, and Heath O'Connell

Submissions from 1999

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Compute as Fast as the Engineers Can Think! Utrafast Computing Team Final Report, Robert T. Biedron, P. Mehrotra, Michael L. Nelson, M. L. Preston, J. J. Rehder, J. L. Rogersm, D. H. Rudy, J. Sobieski, and O. O. Storaasli

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Reconfigurable Shift Switching Parallel Comparators, R. Lin and S. Olariu

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Smart Objects, Dumb Archives: A User-Centric, Layered Digital Library Framework, Kurt Maly, Michael L. Nelson, and Mohammad Zubair

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A Digital Library for the National Advisory Committee for Aeronautics, Michael L. Nelson

Submissions from 1998

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Buckets: Aggregative, Intelligent Agents for Publishing, Michael L. Nelson, Kurt Maly, Stewart N. T. Shen, and Mohammad Zubair

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Creating a Canonical Scientific and Technical Information Classification System for NCSTRL+, Melissa E. Tiffany and Michael L. Nelson

Submissions from 1997

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Lyceum: A Multi-Protocol Digital Library Gateway, Ming-Hokng Maa, Michael L. Nelson, and Sandra L. Esler

Submissions from 1996

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Time- and Cost-Optimal Parallel Algorithms for the Dominance and Visibility Graphs, D. Bhagavathi, H. Gurla, S. Olariu, J. L. Schwing, and J. Zhang

Submissions from 1994

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The World Wide Web and Technology Transfer at NASA Langley Research Center, Michael L. Nelson and David J. Bianco

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Electronic Document Distribution: Design of the Anonymous FTP Langley Technical Report Server, Michael L. Nelson and Gretchen L. Gottlich

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World Wide Web Implementation of the Langley Technical Report Server, Michael L. Nelson, Gretchen L. Gottlich, and David J. Bianco

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A Strategy for Electronic Dissemination of NASA Langley Technical Publications, Donna G. Roper, Mary K. McCaskill, Scott D. Holland, Joanne L. Walsh, Michael L. Nelson, Susan L. Adkins, Manjula Y. Ambur, and Bryan A. Campbell

Submissions from 1993

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Intel NX to PVM 3.2 Message Passing Conversion Library, Trey Arthur and Michael L. Nelson

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A Comparison of Queueing, Cluster and Distributed Computing Systems, Joseph A. Kaplan and Michael L. Nelson