A selection of faculty publications from the Department of Chemistry and Biochemistry, College of Sciences, Old Dominion University.

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Submissions from 2014

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Recommended Isolated-Line Profile for Representing High-Resolution Spectroscopic Transitions (IUPAC Technical Report), Jonathan Tennyson, Peter F. Bernath, Alain Campargue, Attila G. Császár, Ludovic Daumont, Robert R. Gamache, Joseph T. Hodges, Daniel Lisak, Olga V. Naumenko, and Laurence S. Rothman

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A Molecular-Level Approach for Characterizing Water-Insoluble Components of Ambient Organic Aerosol Particulates Using Ultrahigh-Resolution Mass Spectrometry, A. S. Willoughby, A. S. Wozniak, and Patrick G. Hatcher

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Distinguishing Molecular Characteristics of Aerosol Water Soluble Organic Matter from the 2011 Trans-North Atlantic US GEOTRACES Cruise, A. S. Wozniak, A. S. Willoughby, S. C. Gurganus, and Patrick G. Hatcher

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Compositions and Constituents of Freshwater Dissolved Organic Matter Isolated by Reverse Osmosis, Yulong Zhang, Wen Huang, and Jingdong Mao

Submissions from 2013

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Stratospheric Lifetimes of CFC-12, CCl4, CH4, CH3CL and N20 from Measurements Made By The Atmospheric Chemistry Experiment-Fourier Transform Spectrometer, A. T. Brown, C. M. Volk, M. R. Schoebert, C. D. Boone, and P. F. Bernath

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Real-Time in vivo Imaging of Size-Dependent Transport and Toxicity of Gold Nanoparticles in Zebrafish Embryos Using Single Nanoparticle Plasmonic Spectroscopy, Lauren M. Browning, Tao Huang, and Xiao-Hong Nancy Xu

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The Relation Between Atmospheric Humidity and Temperature Trends for Stratospheric Water, S. Fueglistaler, Y. S. Liu, T. J. Flannaghan, P. H. Haynes, D. P. Dee, W. J. Read, E. E. Remsberg, L. W. Thomason, D. F. Hurst, J. R. Lanzante, and P. F. Bernath

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The Roles of Vertical Advection and Eddy Diffusion in the Equatorial Mesospheric Semi-Annual Oscillation (MSAO), R. L. Gattinger, E. Kyrölä, C. D. Boone, W. F.J. Evans, K. A. Walker, I. C. McDade, P. F. Bernath, and E. J. Llewellyn

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Einstein A Coefficients for Rovibronic Lines of the A2Π → X2Σ+ and B'2Σ+ → X 2Σ+ Transitions of MgH, Ehsan GharibNezhad, Alireza Ahayesteh, and Peter F. Bernath

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Investigation of CO, C2H6 and Aerosols in a Boreal Fire Plume Over Eastern Canada During BORTAS 2011 Using Ground- and Satellite-Based Observations and Model Simulations, D. Griffin, K. A. Walker, J. E. Franklin, M. Parrington, C. Whaley, J. Hopper, J. R. Drummond, P. I. Palmer, K. Strong, T. J. Duck, and P. F. Bernath

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Brust-Schiffrin Synthesis of Catalytic Bipodal PdPt Nanoparticles with Some Mechanistic Insights, Sangbum Han, Vara P. Sheela, Wei Cao, and Balasubramanian Ramjee

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ACE-FTS Observations of Acetonitrile in the Lower Stratosphere, J. J. Harrison and P. F. Bernath

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Improved Method for Quantifying the Air-Sea Flux of Volatile and Semi-Volatile Organic Carbon, Emily Hauser, Rebecca M. Dickhut, Renee Falconer, and Andrew S. Wozniak

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The Magnesium Isotopologues of MgH in the A2Π-X 2Σ+ System, Kenneth H. Hinkle, Lloyd Wallace, Ram S. Ram, Peter F. Bernath, Christopher Sneden, and Sara Lucatello

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Validation of Stratospheric and Mesospheric Ozone Observed by SMILES from International Space Station, Y. Kasai, H. Sagawa, D. Kreyling, E. Dupuy, P. Baron, J. Mendrok, K Suzuki, T. O. Sato, T. Nishibori, S. Mizobuchi, and P. F. Bernath

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Silver Nanoparticles Induce Developmental Stage-Specific Embryonic Phenotypes in Zebrafish, Kerry J. Lee, Lauren M. Browning, Prakash D. Nallathamby, Christopher J. Osgood, and Xiao-Hong Nancy Xu

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Study of Charge-Dependent Transport and Toxicity of Peptide-Functionalized Silver Nanoparticles Using Zebrafish Embryos and Single Nanoparticle Plasmonic Spectroscopy, Kerry J. Lee, Lauren M. Browning, Prakash D. Nallathamby, and Xiao-Hong Nancy Xu

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Production Mechanisms, Number Concentration, Size Distribution, Chemical Composition, and Optical Properties of Sea Spray Aerosols, Nicholas Meskhidze, Markus D. Petters, Kostas Tsigaridis, Tim Bates, Colin O'Dowd, Jeff Reid, Ernie R. Lewis, Brett Gantt, Magdalena D. Anguelova, Prakash V. Bhave, and Andrew Wozniak

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The Relative Contribution of Methanotrophs to Microbial Communities and Carbon Cycling in Soil Overlying a Coal-Bed Methane Seep, Christopher T. Mills, Gregpry F. Slater, Robert F. Dias, Stephanie A. Carr, Christopher M. Reddy, Raleigh Schmidt, and Kevin W. Mandernack

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A Preliminary Examination of an in situ Dual Dye Approach to Measuring Light Fluxes in Lotic Systems, Elizabeth C. Minor, Elizabeth James, Jay A. Austin, Veronica Nelson, Ryan Lusk, and Kenneth Mopper

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Stratospheric Loss and Atmospheric Lifetimes of CFC-11 and CFC-12 Derived From Satellite Observations, K. Minschwaner, L. Hoffmann, A. Brown, M. Riese, R. Müller, and P. F. Bernath

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Quantifying the Impact of BOReal Forest Fires on Tropospheric Oxidants Over the Atlantic Using Aircraft and Satellites (BORTAS) Experiment: Design, Execution and Science Overview, P. I. Palmer; M. Parrington; J. D. Lee; A, C. Lewis; A. R. Rickard; P. F. Bernath; T. J. Duck; D. L. Waugh; D. W. Tarasick; and S. Andrews

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Hydrocarbons in the Upper Troposphere and Lower Stratosphere Observed from ACE-FTS and Comparisons with WACCM, Mijeong Park, William J. Randel, Douglas E. Kinnison, Louisa K. Emmons, Peter F. Bernath, Kaley A. Walker, Chris D. Boone, and Nathaniel J. Livesey

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Direct Synthesis of Hollow Polymeric Nanocapsules of Variable Shell Thickness and Rigidity, Balasubramanian Ramjee, Sangbum Han, and Christian Chamberlayne

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Harmonized Dataset of Ozone Profiles from Satellite Limb and Occultation Measurements, V. F. Sofieva, N. Rahpoe, J. Tamminen, E. Kyrölä, N. Kalakoski, M. Weber, A. Rozanov, C. von Savigny, A Laeng, T. von Clarmann, P. Bernath, and R. J. Hargreaves

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HCI and CIO Profiles Inside the Antarctic Vortex as Observed by Smiles in November 2009: Comparisons with MLS and ACE-FTS Instruments, T. Sugita, Y. Kasai, Y. Terao, S. Hayashida, G. L. Manney, W. H. Daffer, H. Sagawa, M. Suzuki, M. Shiotani, K. A. Walker, C. D. Boone, and P. F. Bernath

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Interaction Mechanism of Benzene and Phenanthrene in Condensed Organic Matter: Importance of Adsorption (Nanopore-Filling), Ke Sun, Yong Ran, Yu Yang, Baoshan Xing, and Jingdong Mao

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IUPAC Critical Evaluation of the Rotational-Vibrational Spectra of Water Vapor, Part III: Energy Levels and Transition Wavenumbers for H216O, Jonathan Tennyson, Peter F. Bernath, Linda R. Brown, Alain Campargue, Attila G. Csaszar, Ludovic Daumont, Robert R. Gamache, Joseph T. Hodges, Olga V. Naumenko, and Oleg L. Polyansky

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ACE-FTS Observations of Pyrogenic Trace Species in Boreal Biomass Burning Plumes During BORTAS, K. A. Tereszchuk, G. G. Abad, C. Clerbaux, J. Hadji-Lazaro, D. Hurtmans, P. F. Coheur, and P. F. Bernath

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Observations of Peroxyacetyl Nitrate (PAN) in the Upper Troposphere by the Atmospheric Chemistry Experiment-Fourier Transform Spectrometer (ACE-FTS), K. A. Tereszchuk, D. P. Moore, J. J. Harrison, C. D. Boone, M. Park, J. J. Remedios, W. J. Randel, and P. F. Bernath

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ACE-FTS Version 3.0 Data Set: Validation and Data Processing Update, Claire Waymark, Kaley A. Walker, Chris D. Boone, and Peter F. Bernath

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Uncertainties in Modelling Heterogeneous Chemistry and Arctic Ozone Depletion in the Winter 2009/2010, I. Wohltmann, T. Wegner, R. Müller, R. Lehmann, M. Rex, G. L. Manney, M. L. Santee, P. Bernath, and O. Suminska-Ebersoldt

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Ultrasensitive Analysis of Binding Affinity of HIV Receptor and Neutralizing Antibodies Using Solution-Phase Electrochemiluminescence Assay, Xiao-Hong Nancy Xu, Zhaoyang Wen, and William J. Brownlow

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Role of Extractable and Residual Organic Matter Fractions on Sorption of Phenanthrene in Sediments, Yulong Zhang, Yong Ran, and Jingdong Mao

Submissions from 2012

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Validation of ACE and OSIRIS Ozone and NO2 Measurements Using Ground Based Instruments at 80° N, C. Adams, K. Strong, R. L. Batchelor, Peter F. Bernath, S. Brohede, C. Boone, D. Degenstein, W. H. Daffer, J. R. Drummund, and P. F. Fogal

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Greenhouse Gas Measurements Over a 144 km Open Path in the Canary Islands, J.S. A. Brooke, P. F. Bernath, G. Kirchengast, C. B. Thomas, J. G. Wang, K. A. Tereszchuk, G. González Abad, R. J. Hargreaves, C. A. Beale, and J. J. Harrison

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Observation of Sulfate Aerosols and SO₂ From the Sarychev Volcanic Eruption Using Data From the Atmospheric Chemistry Experiment (ACE), D. Doeringer, A. Eldering, C. D. Boone, G. González Abad, and P. F. Bernath

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Protein Structure Networks, Lesley H. Greene

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Protein Folding by 'Levels of Separation': A Hypothesis, Lesley H. Greene and Terri M. Grant

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Hot Methane Line Lists for Exoplanet and Brown Dwarf Atmospheres, Robert J. Hargreaves, Christopher A. Beale, Laurent Michaux, Melis Irfan, and Peter F. Bernath

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First Remote Sensing Observations of Trifluoromethane (HFC-23) in the Upper Troposphere and Lower Stratosphere, Jeremy J. Harrison, Christopher D. Boone, Alexander T. Brown, Nicholas D. C. Allen, Geoffrey C. Toon, and Peter F. Bernath

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Atmospheric Effects of Energetic Particle Precipitation in the Arctic Winter 1978-1979 Revisted, L. A. Holt, C. E. Randall, V. L. Harvey, E. E. Remsberg, G. P. Stiller, B. Funke, P. F. Bernath, and K. A. Walker

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Compositional Features of Japanese Humic Substances Society Standard Soil Humic and Fulvic Acids by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry and X-Ray Diffraction Profile Analysis, Kosuke Ikeya, Rachel L. Sleighter, Patrick G. Hatcher, and Akira Watanabe

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Technical Note: A Trace Gas Climatology Derived From the Atmospheric Chemistry Experiment Fourier Transform Spectrometer (ACE-FTS) Data Set, A. Jones, K. A. Walker, J. J. Jin, J. R. Taylor, C. D. Boone, P. F. Bernath, S. Brohede, G. L. Manney, S. McLeod, R. Hughes, and W. H. Daffer

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In Vivo Quantitative Study of Sized-Dependent Transport and Toxicity of Single Silver Nanoparticles Using Zebrafish Embryos, Kerry J. Lee, Lauren M. Browning, Prakash D. Nallathamby, Tanvi Desai, Pavan K. Cherukui, and Xiao-Hong Nancy Xu

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Global and Long-Term Comparison of SCIAMACHY Limb Ozone Profiles With Correlative Satellite Data (2002-2008), S. Mieruch, M. Weber, C. von Savigny, A. Rozanov, H. Bovensmann, J. P. Burrows, P. F. Bernath, C. D. Boone, L. Froidevaux, L. L. Gordley, M. G. Mlynczak, J. M. Russell III, L. W. Thomason, K. A. Walker, and J. M. Zawodny

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Analysis of IASI Tropospheric O₃ Data Over the Arctic During POLARCAT Campaigns in 2008, M. Pommier, C. Clerbaux, K. S. Law, G. Ancellet, P. Bernath, P.-F. Coheur, J. Hadji-Lazaro, D. Hurtmans, P. Nédélec, J.-D. Paris, F. Ravetta, T. B. Ryerson, H. Schlager, and A. J. Weinheimer

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Tunable Gold Nanostructures with Nanocapsules as Template Reaction Vessels, Balasubramanian Ramjee, Srujana Prayakarao, Sangbum Han, and Wei Cao

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Global Variations of HDO and HDO/H2O Ratios in the Upper Troposphere and Lower Stratosphere Derived from ACE-FTS Satellite Measurements, William J. Randel, Elisabeth Moyer, Mijeong Park, Eric Jensen, and Peter Bernath

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Process-Evaluation of Tropospheric Humidity Simulated by General Circulation Models Using Water Vapor Isotopic Observations: 2. Using Isotopic Diagnostics to Understand the Mid and Upper Tropospheric Moist Bias in the Tropics and Subtropics, Camille Risi, David Noone, John Worden, Christian Frankenberg, Gabriele Stiller, Michael Kiefer, Bernd Funke, Kaley Walker, Peter Bernath, Matthias Schneider, Sandrine Bony, Jeonghoon Lee, Derek Brown, and Christophe Sturm

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Process-Evaluation of Tropospheric Humidity Simulated By General Circulation Models Using Water Vapor Isotopologues: 1. Comparison Between Models and Observations, Camille Risi, David Noone, John Worden, Christian Frankenberg, Gabriele Stiller, Michael Kiefer, Bernd Funke, Kaley Walker, Peter Bernath, Matthias Schneider, Debra Wunch, Vanessa Sherlock, Nicholas Deutscher, David Griffith, Paul O. Wennberg, Kimberly Strong, Dan Smale, Emmanuel Mahieu, Sabine Barthlott, Frank Hase, Omaira García, Justus Notholt, Thorsten Warneke, Geoffrey Toon, David Sayres, Sandrine Bony, Jeonghoon Lee, Derek Brown, Ryu Uemura, and Christophe Sturm

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Isotopic Characterization of Aerosol Organic Carbon Components Over the Eastern United States, Andrew S. Wozniak, James E. Bauer, Rebecca M. Dickhut, Xu Li, and Ann P. McNichol

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Effects of Root-Zone Temperature and N, P, and K Supplies on Nutrient Uptake of Cucumber (Cucumis sativus L.) Seedlings in Hydroponics, Qiuyan Yan, Zengqiang Duan, Jingdong Mao, Xun Li, and Fei Dong

Submissions from 2011

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Localized Surface Plasmon Resonance of Single Silver Nanoparticles Studied by Dark-Field Optical Microscopy and Spectroscopy, Wei Cao, Tao Huang, Xiao-Hong Nancy Xu, and Hani E. Elsayed-Ali

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A Mini-Electrodialysis System for Desalting Small Volume Saline Samples for Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Hongmei Chen, Aron Stubbins, and Patrick G. Hatcher

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Characterization of Heterogeneities and Domains in Aquatic and Sedimentary Organic Matter by 1 H Spin Diffusion: Potential for Elucidating the Formation Mechanisms, Jingdong Mao and Xiaoyan Cao

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Fourier Transform Emission Spectroscopy of YH and YD: Observation of New A¹Δ and B¹Π Electronic States, R. S. Ram, G. Li, and P. F. Bernath

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Fourier Transform Mass Spectrometry for the Molecular Level Characterization of Natural Organic Matter: Instrument Capabilities, Applications, and Limitations, Rachel L. Sleighter, Patrick G. Hatcher, and Goran Nikolić (Ed.)

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ACE-FTS Measurements of Trace Species in the Characterization of Biomass Burning Plumes, K. A. Tereszchuk, G. González Abad, C. Clerbaux, D. Hurtmans, P.-F. Coheur, and P. F. Bernath

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Fossil and Contemporary Aerosol Particulate Organic Carbon in the Eastern United States: Implications for Deposition and Inputs to Watersheds, Andrew S. Wozniak, James E. Bauer, and Rebecca M. Dickhut

Submissions from 2010

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Effluent Organic Nitrogen (EON): Bioavailability and Photochemical and Salinity-Mediated Release, Deborah A. Bronk, Quinn N. Roberts, Marta P. Sanderson, Elizabeth A. Canuel, Patrick G. Hatcher, Rajaa Mesfioui, Katherine C. Filippino, Margaret R. Mulholland, and Nancy G. Love

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Electric Pulses to Prepare Feeder Cells for Sustaining and Culturing of Undifferentiated Embryonic Stem Cells, Lauren M. Browning, Tao Huang, and Xiao-Hong Nancy Xu

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Sequence and Structural Analysis of the Chitinase Insertion Domain Reveals Two Conserved Motifs Involved in Chitin Binding, Hai Li and Lesley H. Greene

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Temporal Controls on Dissolved Organic Matter and Lignin Biogeochemistry in a Pristine Tropical River, Democratic Republic of Congo, Robert G. M. Spencer, Peter J. Hernes, Rosmarie Ruf, Andy Baker, Rachael Y. Dyda, Aron Stubbins, and Johan Six

Submissions from 2009

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Theoretical Studies of 2,3 -Sigmatropic Rearrangements of Allylic Selenoxides and Selenimides, Craig A. Bayse and Sonia Antony

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Electrospray and Photoionization Mass Spectrometry for the Characterization of Organic matter in Natural Waters: A Qualitative Assessment, William C. Hockaday, Jeremiah M. Pucell, Alan G. Marshall, Jeffery A. Baldock, and Patrick G. Hatcher

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Photochemical Degradation of Dissolved Organic Matter and Dissolved Lignin Phenols from the Congo River, Robert G. M. Spencer, Aron Stubbins, Peter J. Hernes, Kenneth Mopper, Anthony K. Aufdenkampe, Rachael Y. Dyda, Vincent L. Mwamba, Arthur M. Mangangu, Jose N. Wabakanghanzi, and Johan Six

Submissions from 2008

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Lignin Degradation in Wood-Feeding Insects, Scott M. Geib, Timothy R. Filley, Patrick G. Hatcher, Kelli Hoover, John E. Carlson, Maria del Mar Jimenez-Gasco, Akiko Nakagawa-Izumi, Rachel L. Sleighter, and Ming Tien

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Absorption Spectral Slopes and Slope Ratios as Indicators of Molecular Weight, Source, and Photobleaching of Chromophoric Dissolved Organic Matter, John R. Helms, Aron Stubbins, Jason D. Ritchie, Elizabeth C. Minor, David J. Kieber, and Kenneth Mopper

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Naturally Present Fatty Acids as Internal Calibrants for Fourier Transform Mass Spectra of Dissolved Organic Matter, Rachel L. Sleighter, Georgina A. McKee, Zhanfei Liu, and Patrick G. Hatcher

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Determination of Photochemically Produced Carbon Dioxide in Seawater, Emily M. White, David J. Kieber, and Kenneth Mopper

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Technical Note: Molecular Characterization of Aerosol-Derived Water Soluble Organic Carbon Using Ultrahigh Resolution Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, A. S. Wozniak, J. E. Bauer, R. L. Sleighter, R. M. Dickhut, and Patrick Hatcher

Submissions from 2007

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Potential for Stimulating Host Anti-Tumor Immune Response via RNAi-Mediated Local FOXP3 Knockdown, N. Klaiber

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Elliptical Micro-Ring Organic Lasers, P. R. Korade; John Ballato; and R, V. Gregory

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In Vivo Imaging of Transport and Biocompatibility of Single Silver Nanoparticles in Early Development of Zebrafish Embryos, Kerry J. Lee, Prakash D. Nallathamby, Lauren M. Browning, Christopher J. Osgood, and Xiao-Hong Nancy Xu

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The Shape of Pulverized Bituminous Vitrinite Coal Particles, Jonathan P. Mathews, Patrick G. Hatcher, and Alan W. Scaroni

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The Application of Electrospray Ionization Coupled to Ultrahigh Resolution Mass Spectrometry for the Molecular Characterization of Natural Organic Matter, Rachel L. Sleighter and Patrick G. Hatcher

Submissions from 2006

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2-Aminoethoxydiphenyl Borate as a Prototype Drug for a Group of Structurally Related Calcium Channel Blockers in Human Platelets, Yuliya Dobrydneva, Christopher J. Abelt, Beth Dovel, Celina M. Thadigiri, Roy L. Williams, and Peter F. Blackmore

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Effects of Salinity Changes on the Photodegradation and Ultraviolet-Visible Absorbance of Terrestrial Dissolved Organic Matter, E. C. Minor, J. Pothen, B. J. Dalzell, H. Abdulla, and K. Mopper

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Open-Ocean Carbon Monoxide Photoproduction, Aron Stubbins, Günther Uher, Cliff S. Law, Kenneth Mopper, Carol Robinson, and Robert C. Upstill-Goddard

Submissions from 2005

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Effect of Humic Substance Photodegradation on Bacterial Growth and Respiration in lake Water, Alexandre M. Anesio, William Granéli, George R. Aiken, David J. Kieber, and Kenneth Mopper

Submissions from 2004

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Chemical Vapor Deposited Diamond Films for Self-Referencing Fiber Optic Raman Probes [Erratum], Sacharia Albin, Jainli Zheng, Bing Xiao, John B. Cooper, Robert B. Jeffers, and Sonia Antony

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Interactive Regulation of Dissolved Copper Toxicity by an Estuarine Microbial Community, Christina L. Dryden, Andrew S. Gordon, and John R. Donat

Submissions from 2003

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Chemical Vapor Deposited Diamond Films for Self-Referencing Fiber Optic Raman Probes, Sacharia Albin, Jianli Zheng, Bing Xiao, John B. Cooper, Robert B. Jeffers, and Sonia Antony

Submissions from 2001

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Meso-1, 2-Bis (Methylazo)-1, 2-Diphenylethane, Craig A. Bayse, Barry K. Carpenter, and Rudy L. Luck

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STM and Electrochemical Investigation of Homoepitaxial Boron-Doped CVD Diamond Films, John B. Cooper, Jason A. Moulton, Sacharia Albin, and Bing Xiao

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Analysis of Wine for Penicillin, Gary Morris, James Yuan, and Roy Williams

Submissions from 1999

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trans-Resveratrol Inhibits Calcium Influx in Thrombin-Stimulated Human Platelets, Yuliya Dobrydneva, Roy L. Williams, and Peter F. Blackmore

Submissions from 1997

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Microwave Plasma Chemical Vapor Deposited Diamond Tips for Scanning Tunneling Microscopy, Sacharia Albin, Jianli Zheng, John B. Cooper, Weihai Fu, and Arnel C. Lavarias

Submissions from 1996

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Modulation of Queuine Uptake and Incorporation into tRNA by Protein Kinase C and Protein Phosphatase, Rana C. Morris, Bonnie J. Brooks, K. Lenore Hart, and Mark S. Elliot

Submissions from 1995

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Activation of Transfer RNA-Guanine Ribosyltransferase by Protein Kinase C, Rana C. Morris, Bonnie J. Brooks, Panayota Eriotou, Deborah F. Kelly, Sandeep Sagar, K. Lenore Hart, and Mark S. Elliot

Submissions from 1990

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Evaluation of the Function Exp (X2) Erfc (X) to Higher Precisions for Higher-Order Derivative Polarography of CE-Type Electrode Process, Myung-Hoon Kim, Veriti P. Smith, and Tae-Kee Hong

Submissions from 1989

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Permanganate Colorimetric Rapid Method for Chemical Oxygen Demand in Seawater, Myung Zoon Czae, Taekee Hong, and Myung Hoon Kim

Submissions from 1982

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Organic N-Chloramines: Chemistry and Toxicology, Frank E. Scully, Jr. and Maxwell A. Bempong