A selection of faculty publications from the Department of Biological Sciences, College of Sciences, Old Dominion University.

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Submissions from 2013

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Fire, Hurricane and Carbon Dioxide: Effects on Net Primary Production of a Subtropical Woodland, Bruce A. Hungate, Frank P. Day, Paul Dijkstra, Benjamin D. Duval, C. Ross Hinkle, and J. Adam Langley

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Cumulative Response of Ecosystem Carbon and Nitrogen Stocks to Chronic CO2 Exposure in a Subtropical Oak Woodland, Bruce A. Hungate, Paul Dijkstra, Zhuoting Wu, Benjamin D. Duval, Frank P. Day, and Alisha L.P. Brown

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Chemical Defense of an Asian Snake Reflects Local Availability of Toxic Prey and Hatchling Diet, D. A. Hutchinson, A. H. Savitzky, G. M. Burghardt, C. Nguyen, J. Meinwald, F. C. Schroeder, and A. Mori

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Seasonal Dynamics of Mesodinium rubrum in Chesapeake Bay, Matthew D. Johnson, Doane K. Stoecker, and Harold G. Marshall

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Larval Connectivity and the International Management of Fisheries, Andrew S. Kough, Claire B. Paris, and Mark J. Butler IV

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Erosive Hand Osteoarthritis is Associated with Subclinical Atherosclerosis and Endothelial Dysfunction, Athanasios Koutroumpas, Athanasios Giannoukas, Elias Zintzaras, Ekaterini Exarchou, Aris Baliakos, Konstantinos Makaritsis, and Lazaros I. Sakkas

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Phytoplankton in Virginia Lakes and Reservoirs, Harold G. Marshall

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The Role of p38 MAPK in the Aetiopathogenesis of Psoriasis and Psoriatic Arthritis, Athanasios Mavropoulos, Eirini I. Rigopoulou, Christos Liaskos, Dimitrios P. Bogdanos, and Lazaros I. Sakkas

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Does Pitcher Plant Morphology Affect Spider Residency?, Marc A. Milne and Deborah A. Waller

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Distribution, Prevalence, and Genetic Analysis of Panulirus Argus Virus 1 (Pav1) from the Caribbean Sea, Jessica Moss, Donald C. Behringer Jr., Jeffrey D. Shields, Antonio Baeza, Alfonso Aguilar-Perera, Phillippe G. Bush, Clement Dromer, Alejandro Herrera-Moreno, Lester Gittens, Thomas R. Matthews, Michael R. McCord, Michelle T. Schärer, Lionel Reynal, Nathanial Truelove, and Mark J. Butler IV

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The Use of Metagenomic Approaches to Analyze Changes in Microbial Communities, Girish Neelakanta and Hameeda Sultana

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Conus: First Comprehensive Conservation Red List Assessment of a Marine Gastropod Mollusc Genus, Howard Peters, Bethan C. O'Leary, Julie P. Hawkins, Kent E. Carpenter, and Callum M. Roberts

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The Population Dynamics of Two Rodents in Two Coastal Marshes in Virginia, Robert K. Rose and John A. March

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The Small Mammals of Two Dune Communities in Southeastern Virginia, Robert K. Rose and Justin L. Sweitzer

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Cooperative Breeding and Long-Distance Dispersal: A Test Using Vagrant Records, Caroline L. Rusk, Eric L. Walters, and Walter D. Koenig

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Habitat Availability and Heterogeneity and The Indo-Pacific Warm Pool as Predictors of Marine Species Richness in the Tropical Indo-Pacific, Jonnell C. Sanciangco, Kent E. Carpenter, Peter J. Etnoyer, and Fabio Moretzsohn

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Age-Associated Metabolic and Morphologic Changes in Mitochondria of Individual Mouse and Hamster Oocytes, Fatma Simsek-Duran, Fang Li, Wentia Ford, R. James Swanson, Howard W. Jones Jr., and Frank J. Castora

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Direct and Legacy Effects of Long-Term Elevated CO2 on Fine Root Growth and Plant-Insect Interactions, Peter Stiling, Daniel Moon, Anthony Rossi, Rebecca Forkner, Bruce A. Hungate, Frank P. Day, Rachel E. Schroeder, and Bert Drake

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A Mesh Generation and Machine Learning Framework for Drosophila Gene Expression Pattern Image Analysis, Wenlu Zhang, Daming Feng, Rongjian Li, Andrey Chernikov, Nikos Chrisochoides, Christopher Osgood, Charlotte Konikoff, Stuart Newfeld, Sudhir Kumar, and Shuiwang Ji

Submissions from 2012

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Reproductive Biology and Recruitment of Xiphopenaeus kroyeri in a Marine Protected Area in the Western Atlantic: Implications for Resource Management, Ariádine C. Almeida, J. Antonio Baeza, Vivian Fransozo, Antonio L. Castilho, and Adilson Fransozo

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Testing the Role of Male-Male Competition in the Evolution of Sexual Dimorphism: A Comparison Between Two Species of Porcelain Crabs, J. Antonio Baeza and Cynthia M. Asorey

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Enhanced Killing Effect of Nanosecond Pulse Electric Fields on PANC1 and Jurkat Cell Lines in the Presence of Tween 80, Gaurav Basu, Bhargava Subhash Kalluri, Ahmet Can Sabuncu, Christopher J. Osgood, and Michael W. Stacey

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Regulation of the vapBC-1 Toxin-Antitoxin Locus in Nontypeable Haemophilus influenzae, Susan D. Cline, Sehresh Saleem, and Dayle A. Daines

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The Likelihood of Extinction of Iconic and Dominant Herbivores and Detritivores of Coral Reefs: The Parrotfishes and Surgeonfishes, Mia T. Comeros-Raynal, John H. Choat, Beth A. Polidoro, Kendall D. Clements, Rene Abesamis, Matthew T. Craig, Muhammad E. Lazuardi, Jennifer McIlwain, Andreas Muljadi, Robert F. Myers, Cleto L. Nanola Jr., Shinta Pardede, Luiz A. Rocha, Barry Russell, Jonnell C. Sanciangco, Brian Stockwell, Heather Harwell, and Kent E. Carpenter

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Expansion Dating: Calibrating Molecular Clocks in Marine Species from Expansions onto the Sunda Shelf Following the Last Glacial Maximum, Eric D. Crandall, Elizabeth J. Sbrocco, Timery S. DeBoer, Paul H. Barber, and Kent E. Carpenter

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Mutation in the Plasmodium falciparum CRT Protein Determines the Stereospecific Activity of Antimalarial Cinchona Alkaloids, Carol E. Griffin, Jonathan M. Hoke, Upeka Samarakoon, Junhui Duan, Jianbing Mu, Michael T. Ferdig, David C. Warhurst, and Roland A. Cooper

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Effects of Temperature on Emergence and Seasonality of West Nile Virus in California, David M. Hartley, Christopher M. Barker, Arnaud Le Menach, Tianchan Niu, Holly Gaff, and William K. Reisen

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Successful Genotyping of Microsatellites in the Woolly Mammoth, Yasuko Ishida, Alfred L. Roca, Stephen Fratpietro, and Alex D. Greenwood

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Brooding, Provisioning, and Compensatory Care in the Cooperatively Breeding Acorn Woodpecker, Walter D. Koenig and Eric L. Walters

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A Global Diatom Database- Abundance, Biovolume and Biomass in the World Ocean, K. Leblanc, J. Aristegui, L. Armand, P. Assmy, B. Becker, A. Bode, E. Breton, V. Cornet, J. Gibson, M. P. Gosselin, and H. Marshall

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Unusually High Body Mass in Virginia Meadow Voles, Sara B. Longtin and Robert K. Rose

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In Vitro Propagation of Candidatus Rickettsia andeanae Isolated From Amblyomma maculatum, Alison Luce-Fedrow, Chelsea Wright, Holly D. Gaff, Daniel E. Sonenshine, Wayne L. Hynes, and Allen L. Richards

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Cyanobacteria Dominance in the Oligohaline Waters of Back Bay, Virginia, Harold G. Marshall

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Extinction Risk and Bottlenecks in the Conservation of Charismatic Marine Species, Loren McClenachan, Andrew B. Cooper, Kent E. Carpenter, and Nicholas K. Dulvy

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Genetic Diversity of the Caribbean Spiny Lobster Virus, Panulirus Argus Virus 1 (PaV1), and the Discovery of PaV1 in Lobster Postlarvae, Jessica Moss, Mark J. Butler IV, Donald C. Behringer Jr., and Jeffrey D. Shields

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An Epidemiological Model of Rift Valley Fever with Spatial Dynamics, Tianchan Niu, Holly D. Gaff, Yiannis E. Papelis, and David M. Hartley

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Protandric Simultaneous Hermaphroditism in Parhippolyte Misticia (Clark, 1989) (Caridea: Hippolytidae): Implications for the Evolution of Mixed Sexual Systems in Shrimp, Hitoshi Onaga, G. Curt Fiedler, and J. Antonio Baeza

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Patterns of Extinction Risk and Threat for Marine Vertebrates and Habitat-Forming Species in the Tropical Eastern Pacific, Beth A. Polidoro, T. Brooks, Kent E. Carpenter, G. J. Edgar, S Henderson, J. Sanciangco, and D. R. Robertson

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Toxin-Antitoxic Loci vapBC-1 and vapXD Contribute to Survival and Virulence in Nontypeable Haemophilus influenzae, Dabin Ren, Anna N. Walker, and Dayle A. Daines

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Molecular Phylogenetics of Alternanthera (Gomphrenoideae, Amaranthaceae): Resolving a Complex Taxonomic History Caused by Different Interpretations of Morphological Characters in a Lineage with C4 and C3-C4 Intermediate Species, Ivonne Sánchez-Del Pino, Timothy J. Motley, and Thomas Borsch

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Molecular Characterization and Tissue-Specific Gene Expression of Dermacentor variabilis α-catenin in Response to Rickettsial Infection, Piyanate Sunyakumthorn, Natthida Petchampai, Michael T. Kearney, Daniel E. Sonenshine, and Kevin R. Macaluso

Submissions from 2011

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Review of Panulirus Argus Virus 1-- A Decade After its Discovery, Donald C. Behringer Jr., Mark J. Butler IV, Jeffrey D. Shields, and Jessica Moss

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Disease Effects on Lobster Fisheries, Ecology, and Culture: Overview of DAO Special 6, Donald C. Behringer, Mark J. Butler IV, and Grant D. Stentiford

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A New Species of Diploid Quillwort (Isoetes, Isoetaceae, Lycophyta) from Lebanon, Jay F. Bolin, Rebecca D. Bray, and Lytton John Musselman

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Behavior Constrains the Dispersal of Long-Lived Spiny Lobster Larvae, Mark J. Butler IV, Claire B. Paris, Jason S. Goldstein, Hirokazu Matsuda, and Robert K. Cowen

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Gulf of Mexico Oil Blowout Increases Risks to Globally Threatened Species, Claudio Campagna, Frederick T. Short, Beth A. Polidoro, Roger McManus, Bruce B. Collette, Nicolas J. Pilcher, Yvonne Sadovy De Mitcheson, Simon N. Stuart, and Kent E. Carpenter

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Comparative Phylogeography of the Coral Triangle and Implications for Marine Management, Kent E. Carpenter, Paul H. Barber, Eric D. Crandall, Maria Carmen A. Ablan-Lagman, Ambariyanto Ambariyanto, Gusti Ngurah Mahardika, B. Mabel Manjaji-Matsumoto, Marie Antonette Junio-Menez, Mudjekeewis D. Santos, Craig J. Starger, and Abdul Hamid A. Toha

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Classroom Manipulative to Engage Students in Mathematical Modeling of Disease Spread: 1 + 1 = Achoo!, H. Gaff, M. Lyons, and G. Watson

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Preliminary Analysis of an Agent-Based Model for a Tick-Borne Disease, Holly Gaff

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Use of Optimal Control Models to Predict Treatment Time for Managing Tick-Borne Disease, Holly D. Gaff, Elsa Schaefer, and Suzanne Lenhart

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Characterization of Photochromogenic Mycobacterium spp. from Chesapeake Bay Striped Bass Morone Saxatilis, D. T. Gauthier, A. M. Helenthal, M. W. Rhodes, W. K. Vogelbein, and H. I. Kator

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Human Endogenous Retrovirus Transcription Profiles of the Kidney and Kidney-Derived Cell Lines, Sonja Haupt, Michele Tisdale, Michelle Vincendeau, Mary Anne Clements, David T. Gauthier, Raymond Lance, O. John Demmes, Adriana Tuqueti-Neves, Elfriede Noessner, Christine Leib-Mösch, and Alex D. Greenwood

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Variable Helper Effects, Ecological Conditions, and the Evolution of Cooperative Breeding in the Acorn Woodpecker, Walter D. Koenig, Eric L. Walters, and Joseph Haydock

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Effects of Gypsy Moth Outbreaks on North American Woodpeckers, Walter D. Koenig, Eric L. Walters, and Andrew M. Liebhold

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Estimating the Reproductive Numbers for the 2008-2009 Cholera Outbreaks in Zimbabwe, Zindoga Mukandavire, Shu Liao, Jin Wang, Holly Gaff, David L. Smith, and J. Glenn Morris Jr.

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Ixodes affinis (Acari: Ixodidae) in Southeastern Virginia and Implications for the Spread of Borrelia burgdorferi, the Agent of Lyme Disease, Robyn M. Nadolny, Chelsea L. Wright, Wayne L. Hynes, Daniel E. Sonenshine, and Holly Gaff

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The Fecal Viral Flora of Wild Rodents, Tung G. Phan, Beatrix Kapusinszky, Chunlin Wang, Robert K. Rose, Howard L. Lipton, and Eric L. Delwart

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Conservation Status of Marine Biodiversity in Oceania: An Analysis of Marine Species on the IUCN Red List of Threatened Species, Beth A. Polidoro, Cristiane T. Elfes, Jonnell C. Sanciangco, Helen Pippard, and Kent E. Carpenter

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An Apoptosis Targeted Stimulus with Nanosecond Pulsed Electric Fields (nsPEFs) in E4 squamous Cell Carcinoma, Wei Ren and Stephen J. Beebe

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Range Extension for the Dismal Swamp Southern Bog Lemming, Synaptomys cooperi helaletes, in Eastern Virginia, Robert K. Rose

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Breeding Biology of Oryzomys Palustris, the Marsh Rice Rat, in Eastern Virginia, Robert K. Rose and Erin A. Dreelin

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First Transcriptome of the Testis-Vas Deferens-Male Accessory Gland and Proteome of the Spermatophore From Dermacentor variabilis (Acari: Ixodidae), Daniel E. Sonenshine, Brooke W. Bissinger, Noble Egekwu, Kevin V. Donohue, Sayed M. Khalil, and R. Michael Roe

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Nanosecond Pulse Electrical Fields Used in Conjunction with Multi-Wall Carbon Nanotubes as a Potential Tumor Treatment, Michael W. Stacey, Christopher Osgood, Bhargava Subhash Kalluri, Wei Cao, Hani Elsayed-Ali, and Tarek Abdel-Fattah

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A New Species of the Subterranean Amphipod Crustacean Genus Stygobromus (Crangonyctidae) From a Cave in Nevada, USA, Steven J. Taylor and John R. Holsinger

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Estimating the Impact of Human Papillomavirus (HPV) Vaccination on HPV Prevalence and Cervical Cancer Incidence in Mali, LeRee Tracy, Holly Gaff, Colleen Burgess, Samba Sow, Patti E. Gravitt, and J. Kathleen Tracy

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Rickettsia parkeri in Gulf Coast Ticks, Southeastern Virginia, USA, Chelsea L. Wright, Robyn M. Nadolny, Ju Jiang, Allen L. Richards, Daniel E. Sonenshine, Holly D. Gaff, and Wayne L. Hynes

Submissions from 2010

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Ancient DNA Analyses Exclude Humans as the Driving Force Behind Late Pleistocene Musk Ox (Ovibos moschatus) Population Dynamics, Paula F. Campos, Eske Willerslev, Andrei Sher, Ludovic Orlando, Erik Axelsson, Alexei Tikhonov, Kim Aaris-Sorensen, Alex D. Greenwood, Ralf-Dietrich Kahlke, and Pavel Kosintsev

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Apoptosis Initiation and Angiogenesis Inhibition: Melanoma Targets for Nanosecond Pulsed Electric Fields, Xinhua Chen, Juergen F. Kolb, R. James Swanson, Karl H. Schoenbach, and Stephen J. Beebe

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Morphological Differences Among Eyeless Amphipods in the Genus Stygobromus Dwelling in Different Subterranean Habitats, David C. Culver, John R. Holsinger, Mary C. Christman, and Tanja Pipan

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Quantitative PCR Assay for Mycobacterium Pseudoshottsii and Mycobacterium Shottsii and Application to Environmental Samples and Fishes from the Chesapeake Bay, D. T. Gauthier, K. S. Reece, J. Xiao, M. W. Rhodes, H. I. Kator, R. J. Latour, C. F. Bonzek, J. M. Hoenig, and W. K. Vogelbein

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Saving Saba Bank: Policy Implications of Biodiversity Studies, Paul C. Hoetjes and Kent E. Carpenter

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The Impact of Conservation on the Status of the World's Vertebrates, Michael Hoffmann, Craig Hilton-Taylor, Ariadne Angulo, Monika Böhm, Thomas M. Brooks, Stuart H. M. Butchart, Kent E. Carpenter, Janice Chanson, Beth A. Polidoro, and Jonnell C. Sanciangco

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Spawning-Related Movements of Barred Sand Bass Paralabrax nebulifer, in Southern California: Interpretations from Two Decades of Historical Tag and Recapture Data, E. T. Jarvis, Christi Linardich, and C. F. Valle

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"Beyond BIO2010: Celebration and Opportunities" at the Intersection of Mathematics and Biology, John R. Jungck, Holly D. Gaff, Adam P. Fagen, and Jay B. Labov

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Mathematical Manipulative Models: In Defense of "Beanbag Biology", John R. Jungck, Holly Gaff, and Anton E. Weisstein

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Micro-Environment and Plant Assemblage Structure on Virginia's Barrier Island "Pimple" Dunes, Brett A. McMillan and Frank P. Day

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Conservation Status and Habitat Use of the West Virginia Spring Salamander (Gyrinophilus Subterraneus) and Spring Salamander (G. Porphyriticus) in General Davis Cave, Greenbrier Co., West Virginia, Matthew L. Niemiller, Michael S. Osbourn, Dante B. Fenolio, Thomas K. Pauley, Brian T. Miller, and John R. Holsinger

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Chloroquine Susceptibility and Reversibility in a Plasmodium Falciparum Genetic Cross, Jigar J. Patel, Drew Thacker, John C. Tan, Perri Pleeter, Lisa Checkley, Joseph M. Gonzales, Bingbing Deng, Paul D. Roepe, Roland A. Cooper, and Michael T. Ferdig

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The Loss of Species: Mangrove Extinction Risk and Geographic Areas of Global Concern, Beth A. Polidoro, Kent E. Carpenter, Lorna Collins, Norman C. Duke, Aaron M. Ellison, Joanna C. Ellison, Elizabeth J. Farnsworth, Edwino S. Fernando, Kandasamy Kathiresan, Nico E. Koedam, Suzanne R. Livingstone, Toyohiko Miyagi, Gregg E. Moore, Vien Ngoc Nam, Jin Eong Ong, Jurgenne H. Primavera, Serverino G. Salmo, Jonnell C. Sanciango, Sukristijono Sukardjo, Yamin Wang, and Jean Wan Hong Yong

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Distinct Macrophage Subpopulations Regulate Viral Encephalitis But Not Viral Clearance in the CNS, Christina D. Steel, Woong-Ki KIm, Larry Sanford, Laurie Wellman, Sandra Burnett, Nico Van Rooijen, and Rochard P. Ciavarra

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Hydrodynamic Fin Function of Brief Squid, Lolliguncula Brevis, William J. Stewart, Ian K. Bartol, and Paul S. Krueger

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The Ontogeny of Muscle Structure and Locomotory Function in the Long-Finned Squid Doryteuthis Pealeii, J. T. Thompson, I. K. Bartol, A. E. Baksi, and P. S. Krueger

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Biodiversity Assessment of the Fishes of Saba Bank Atoll, Netherlands Antilles, Jeffrey T. Williams, Kent E. Carpenter, James L. Van Tassell, Paul Hoetjes, Wes Toller, Peter Etnoyer, and Michael Smith

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Bisphenol A Blood and Saliva Levels Prior to and after Dental Sealant Placement in Adults, Joyce M. Zimmerman-Downs, Deanne Shuman, Sharon C. Stull, and Robert E. Ratzlaff

Submissions from 2009

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DC Electrokinetic Transport of Cylindrical Cells in Straight Microchannels, Ye Ai, Ali Beskok, David T. Gauthier, Sang W. Joo, and Shizhi Qian

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Hydrodynamics of Pulsed Jetting in Juvenile and Adult Brief Squid Lolliguncula Brevis: Evidence of Multiple Jet 'Modes' and Their Implications for Propulsive Efficiency, Ian K. Bartol, Paul S. Krueger, William J. Stewart, and Joseph T. Thompson

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Pulsed Jet Dynamics of Squid Hatchlings at Intermediate Reynolds Numbers, Ian K. Bartol, Paul S. Krueger, William J. Stewart, and Joseph T. Thompson

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Potential Effects of Catastrophic Cyanobacteria Blooms on Caribbean Spiny Lobster Population Dynamics in Florida Bay USA, Donald C. Behringer and Mark J. Butler IV

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Is Seagrass an Important Nursery Habitat for the Caribbean Spiny Lobster, Panulirus argus, in Florida?, Donald C. Behringer, Mark J. Butler IV, William Herrnkind, John H. Hunt, Charles A. Acosta, and William C. Sharp

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A Review of the Lethal Spiny Lobster Virus PaV1 - Ten Years After Its Discovery, Donald C. Behringer, Mark J. Butler IV, and Jeffrey D. Shields

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The Epidemiological Status of PaV1, and the Effects of Infection on Caribbean Spiny Lobster (Panulirus argus) Condition, Olfaction, and Predation Risk, Donald C. Behringer, Mark J. Butler IV, and Jeffrey D. Shields

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Regional Characterisation of Hard-Bottom Nursery Habitat for Juvenile Caribbean Spiny Lobster (Panulirus argus) Using Rapid Assessment Techniques, Rodney D. Bertelsen, Mark J. Butler IV, William F. Herrnkind, and John H. Hunt

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Spatial and Temporal Dynamics of Habitat Selection Across Canopy Gradients Generates Patterns of Species Richness and Composition in Aquatic Beetles, Christopher A. Binkley and William J. Resetarits Jr.

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Comparative Efficacy of BioUD to Other Commercially Available Arthropod Repellants Against the Ticks Amblyomma americanum and Dermacentor variabilis on Cotton Cloth, Brooke W. Bissinger, Jiwei Zhu, Charles S. Apperson, Daniel E. Sonenshine, D. Wesley Watson, and R. Michael Roe

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Habitat-Based Intraguild Predation By Caribbean Reef Octopus Octopus Briareus on Juvenile Caribbean Spiny Lobster Panulirus Argus, Mark J. Butler IV and Jennifer A. Lear

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Patterns of Spiny Lobster (Panulirus argus) Postlarval Recruitment in the Carribbean: A CRTR Project, Mark J. Butler IV, Angela M. Mojica, Eloy Sosa-Cordero, Marines Millet, Paul Sanchez-Navarro, Miguel A. Maldonado, Juan Posada, Bladimir Rodriguez, Carlos M. Rivas, Adrian Oviedo, Marcio Arrone, Martha Prada, Nick Bach, Nilda Jimenez, Maria Del Carmen Garcia-Rivas, Kirah Forman, Donald C. Behringer Jr., Thomas Matthews, Claire Paris, and Robert Cowen

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Results From a Mathematical Model for Human Monocytic Ehrlichiosis, H. Gaff, L. Gross, and E. Schaefer

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Phylogeny, Adaptive Radiation, and Historical Biogeography in Bromeliaceae: Insights from an Eight-Locus Plastid Phylogeny, Thomas J. Givnish, Michael H. J. Barfuss, Benjamin Van Ee, Ricarda Riina, Katharina Schulte, Ralf Horres, Philip A. Gonsiska, Rachel S. Jabaily, Darren M. Crayn, and J. Andrew Smith

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Behavioral Enhancement of Onshore Transport by Postlarval Caribbean Spiny Lobster (Panulirus Argus), Jason S. Goldstein and Mark J. Butler IV

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Growth and Survival in a Northern Population of Hispid Cotton Rats, Heather A. Green and Robert K. Rose